Job Description P07650 Confidence 43.01% Date Wed Jan 25 15:20:12 GMT 2012 Rank 102 Aligned Residues 126 % Identity 13% Template c1qzwC_ PDB info PDB header:signaling protein/rna Chain: C: PDB Molecule:signal recognition 54 kda protein; PDBTitle: crystal structure of the complete core of archaeal srp and2 implications for inter-domain communication Resolution 4.10 Å

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		3	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.					30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.									.	.	50	.	.	.	.	.			.	.	.	.	60	.	.	.	.	.	.	.	.
Predicted Secondary structure																													.	.	.	.																			.	.	.	.	.	.	.	.									.	.
Query SS confidence																													.	.	.	.																			.	.	.	.	.	.	.	.									.	.
Query Sequence		L	A	Q	E	I	I	R	K	K	R	D	G	H	A	L	S	D	E	E	I	R	F	F	I	N	G	I	.	.	.	.	R	D	N	T	I	S	E	G	Q	I	A	A	L	A	M	T	I	F	.	.	.	.	.	.	.	.	F	H	D	M	T	M	P	E	.	.	R	V	S	L	T	M	A	M	R	D	S	G	T
Query Conservation																													.	.	.	.																			.	.	.	.	.	.	.	.									.	.
Alig confidence																													.	.	.	.																			.	.	.	.	.	.	.	.									.	.
Template Conservation
Template Sequence		N	I	R	D	A	V	R	K	F	L	T	G	S	T	P	Y	E	K	A	V	D	E	F	I	K	D	L	Q	K	S	L	I	S	S	D	V	N	V	K	L	V	F	S	L	T	A	K	I	K	E	R	L	N	K	E	K	P	P	S	V	L	E	R	K	E	W	F	I	S	I	V	Y	D	E	L	S	K	L	F	G
Template Known Secondary structure		T	T	T	T								S	S	S		S	T																T	S	S																		T	T					S	S	S																		T	T
Template Predicted Secondary structure
Template SS confidence
		4	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.
		69	70	.	.	.	.	.	.	.	.	.	80			.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.		.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130
Predicted Secondary structure														.	.																		.
Query SS confidence														.	.																		.
Query Sequence		V	L	D	W	K	S	L	H	L	N	G	P	.	.	I	V	D	K	H	S	T	G	G	V	G	D	V	T	S	L	M	.	L	G	P	M	V	A	A	C	G	G	Y	I	P	M	I	S	G	R	G	L	G	H	T	G	G	T	L	D	K	L	E	S	I
Query Conservation														.	.																		.
Alig confidence														.	.																		.																	.	.
Template Conservation																																																		.	.
Template Sequence		G	D	K	E	P	N	V	N	P	T	K	L	P	F	I	I	M	L	V	G	V	Q	G	S	G	K	T	T	T	A	G	K	L	A	Y	F	Y	K	K	R	G	Y	K	V	G	L	V	A	.	.	A	D	V	Y	R	P	A	A	Y	D	Q	L	L	Q	L
Template Known Secondary structure			S						S		S	S	S	S								S	S	S	S	S	S	T	T	T										T	T	S					B			.	.				S	S	S		S
Template Predicted Secondary structure																																																		.	.
Template SS confidence
		84	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.			.	.	.	.	.	.	.	.	140	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions