Job Description P77328 Confidence 5.66% Date Thu Jan 5 12:27:47 GMT 2012 Rank 53 Aligned Residues 362 % Identity 14% Template c2gfpA_ PDB info PDB header:membrane protein Chain: A: PDB Molecule:multidrug resistance protein d; PDBTitle: structure of the multidrug transporter emrd from2 escherichia coli Resolution 3.50 Å

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		11	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.			.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.					.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.
Predicted Secondary structure																							.	.																																	.	.	.	.
Query SS confidence																							.	.																																	.	.	.	.
Query Sequence		L	L	S	G	F	Q	W	F	F	F	I	F	C	N	T	V	V	V	P	P	T	.	.	L	L	S	A	F	Q	L	P	Q	S	S	L	L	T	L	T	Q	Y	A	F	L	A	T	A	L	A	C	F	A	Q	A	F	.	.	.	.	C	G	H	R	R	A	I	M	E	G	P	G	G	L	W	W	G	T	I	L	T
Query Conservation																							.	.																																	.	.	.	.
Alig confidence																							.	.																																	.	.	.	.											.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																																																							.	.	.	.	.	.	.	.	.	.	.
Template Sequence		L	M	L	V	L	L	V	A	V	G	Q	M	A	Q	T	I	Y	I	P	A	I	A	D	M	A	R	D	L	N	V	R	E	G	A	V	Q	S	V	M	G	A	Y	L	L	T	Y	G	V	S	Q	L	F	Y	G	P	I	S	D	R	V	G	R	R	P	V	I	L	V	G	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure																											T	T	S	S	S	T	T																			T	T						T	T	S										.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																																																							.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		11	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.
		85	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	T	L	G	E	A	S	R	G	T	P	I	N	D	I	A	T	S	L	A	V	G	I	A	L	S	G	V	L	T	M	L	I	G	F	S	G	L	G	H	R	L	A	R	L	F	T	P	S	V	M	V	L	F	M	L	M	L	G	A	Q	L	T	T	I	F	F	K	G	M	L	G	L	P	F	G	I	A	D	P
Query Conservation
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	M	S	I	F	M	L	A	T	L	V	A	V	T	T	S	S	L	T	V	L	I	A	A	S	A	M	Q	G	M	G	T	G	V	G	G	V	M	A	R	T	L	P	R	D	L	Y	E	R	T	Q	L
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																																T	S	S
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
																															80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130
		165	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		N	F	K	I	Q	L	P	P	F	A	L	S	V	A	V	M	C	L	V	L	A	M	I	I	F	L	P	Q	R	F	A	R	Y	G	L	L	V	G	T	I	T	G	W	L	L	W	Y	F	C	F	P	S	S	H	S	L	S	G	E	L	H	W	Q	W	F	P	L	G	S	G	G	A	L	S	P	G	I	I	L	T
Query Conservation
Alig confidence
Template Conservation
Template Sequence		R	H	A	N	S	L	L	N	M	G	I	L	V	S	P	L	L	A	P	L	I	G	G	L	L	D	T	M	W	N	W	R	A	C	Y	L	F	L	L	V	L	C	A	G	V	T	F	S	M	A	R	W	M	P	E	T	R	P	V	D	A	P	R	T	R	L	L	T	S	Y	K	T	L	F	G	N	S	G	F	N
Template Known Secondary structure			S																							S	S																										S	S				S	T	T	T						T	T	T		S	T
Template Predicted Secondary structure
Template SS confidence
		131	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
		245	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	V	I	T	G	L	V	N	I	S	N	T	Y	G	A	I	R	G	T	D	V	F	Y	P	Q	Q	G	A	G	N	T	R	Y	R	R	S	F	V	A	T	G	F	M	T	L	I	T	V	P	L	A	V	I	P	F	S	P	F	V	S	S	I	G	L	L	T	Q	T	G	D	Y	T	R	R	S	F	I	Y	G	S
Query Conservation
Alig confidence																					.	.	.	.	.	.	.	.
Template Conservation																					.	.	.	.	.	.	.	.
Template Sequence		C	Y	L	L	M	L	I	G	G	L	A	G	I	A	A	F	E	A	C	.	.	.	.	.	.	.	.	S	G	V	L	M	G	A	V	L	G	L	S	S	M	T	V	S	I	L	F	I	L	P	I	P	A	A	F	F	G	A	W	F	A	G	R	P	N	K	R	F	S	T	L	M	W	Q	S	V	I	C	C	L
Template Known Secondary structure																					.	.	.	.	.	.	.	.		S		S	S																	T														T	T	T	T
Template Predicted Secondary structure																					.	.	.	.	.	.	.	.
Template SS confidence
		211	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.									230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.
		325	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	I	C	L	L	V	A	L	V	P	A	L	T	R	L	F	C	S	I	P	L	P	V	S	S	A	V	M	L	V	S	Y	L	P	L	L	F	S	A	L	V	F	S	Q	Q	I	T	F	T	A	R	N	I	Y	R	L	A	L	P	L	F	V	G	I	F	L	M	A	L	P	P	V	Y	L	Q	D	L	P	L	T
Query Conservation
Alig confidence											.	.
Template Conservation											.	.
Template Sequence		L	A	G	L	L	M	W	I	P	.	.	D	W	F	G	V	M	N	V	W	T	L	L	V	P	A	A	L	F	F	F	G	A	G	M	L	F	P	L	A	T	S	G	A	M	E	P	F	P	F	L	A	G	T	A	G	A	L	V	G	G	L	Q	N	I	G	S	G	V	L	A	S	L	S	A	M	L	P	Q	T
Template Known Secondary structure			T	S	S	S	S	S			.	.																									T	S	S	T	T						T																									S	T	T		T
Template Predicted Secondary structure											.	.
Template SS confidence
		283	.	.	.	.	.	.	290	.			.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360
		405	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	R	P	L	L	S	N	G	L	L	V	G	I	L	L	A	V	L
Query Conservation
Alig confidence
Template Conservation
Template Sequence		G	Q	G	S	L	G	L	L	M	T	L	M	G	L	L	I	V	L
Template Known Secondary structure																			T
Template Predicted Secondary structure
Template SS confidence
		361	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions