 |
Job Description | P77328 | Confidence | 7.44% | Date | Thu Jan 5 12:27:47 GMT 2012 |
Rank | 21 | Aligned Residues | 68 |
% Identity | 4% | Template | c2e0cA_ |
PDB info |
PDB header:oxidoreductase | Chain: A: PDB Molecule:409aa long hypothetical nadp-dependent isocitrate |
PDBTitle: crystal structure of isocitrate dehydrogenase from sulfolobus tokodaii2 strain7 at 2.0 a resolution
|
Resolution | 2.00 Å |
|
 |
  |   |
261 | . | . | . | . | . | . | . | . | 270 | . | . | . | . | . | . | . | . | . | 280 | . | . | . | . | . | . | . | . | . | 290 | . | . | . | . | . | . | . | . | . | 300 | . | . | . | |
|
|
|
|
|
|
|
|
|
|
|
|
. | . | . | . | . | . | 310 | . | . | . | . | . | . | . | . | . | 320 | . | . | . | . | . | . | . |
Predicted Secondary structure |   |
 |  |  |  |  |  |  |
|
|
|
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . | . | . | . | . | . | . | . | . | . | . | . | . |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
R | G | T | D | V | F | Y | P | Q | Q | G | A | G | N | T | R | Y | R | R | S | F | V | A | T | G | F | M | T | L | I | T | V | P | L | A | V | I | P | F | S | P | F | V | . |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
S | S | I | G | L | L | T | Q | T | G | D | Y | T | R | R | S | F | I | Y | G | S | V | I | C |
Query Conservation |   |
  |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |
|
|
|   |
|   |
|
|   |
|
|
|   |
|
|
|
|   |   |
|   |   |   |   |   | . | . | . | . | . | . | . | . | . | . | . | . | . |   |   |   |   |   |   |   |   |
|
|   |   |
|
|   |   |   |   |   |   |   |   |   |   |
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . | . | . | . | . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
  |   |   |   |   |
|
|   |   |
|   |   |
|
|
|
|
|   |   |
|
|
|
|
|
|
|
|
|   |
|
|   |
|   |
|
|
|
|
|   |
|
|
|
|
|
|   |   |   |
|   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|   |   |
|
|
|   |
|   |
|
|
|   |
|
|
|
Template Sequence |   |
N | M | F | Q | Q | I | I | I | R | P | E | E | Y | D | I | I | L | A | P | N | V | N | G | D | Y | I | S | D | A | A | G | A | L | I | G | N | I | G | M | L | G | G | A | N | I | G | D | E | G | G | M | F | E | A | I | H | G | T | A | P | K | Y | A | G | K | N | V | A | N | P | T | G | I | I | K | A | G | E | L | M |
Template Known Secondary structure |   |
 |  |  |  |  |  |  |  |
| G | G | G |
| S |  |  |  |  |
|  |  |  |  |  |  |  |  |  |  |  |  |  | T | T | S |
| G | G | G |
|  |  |  |  |  |  | T | T |  |  |  |  |  |  | S | S |
|
|
| G | G | G | T | T | T | T |
| S |
| T |  |  |  |  |  |  |  |  |  |  |
Template Predicted Secondary structure |   |
 |  |  |  |  |  |  |  |
|
|
|
|
|
|  |  |  |  |
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |
|
|  |  |
|
|
|
|
|
|
|  |  |  |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
275 | . | . | . | . | 280 | . | . | . | . | . | . | . | . | . | 290 | . | . | . | . | . | . | . | . | . | 300 | . | . | . | . | . | . | . | . | . | 310 | . | . | . | . | . | . | . | . | . | 320 | . | . | . | . | . | . | . | . | . | 330 | . | . | . | . | . | . | . | . | . | 340 | . | . | . | . | . | . | . | . | . | 350 | . | . | . | . |
  |
  |   |
328 |
Predicted Secondary structure |   |
 |
Query SS confidence |   |
|
Query Sequence |   |
L |
Query Conservation |   |
|
Alig confidence |   |
|
Template Conservation |   |
|
Template Sequence |   |
L |
Template Known Secondary structure |   |
 |
Template Predicted Secondary structure |   |
 |
Template SS confidence |   |
|
  |   |
355 |
  |
No model constructed - rank, confidence too low
Phyre is for academic use only
Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
  |
|
|