Job Description P0AF10 Confidence 3.82% Date Thu Jan 5 11:24:51 GMT 2012 Rank 40 Aligned Residues 60 % Identity 22% Template c3qqcA_ PDB info PDB header:transcription Chain: A: PDB Molecule:dna-directed rna polymerase subunit b, dna-directed rna PDBTitle: crystal structure of archaeal spt4/5 bound to the rnap clamp domain Resolution 3.30 Å

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		35	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.						.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.													.	.	.	.	90	.	.	.	.
Predicted Secondary structure																															.	.	.	.	.																							.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																															.	.	.	.	.																							.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		R	L	N	A	G	K	T	V	R	S	F	L	I	T	A	V	E	L	L	T	E	A	V	N	L	L	V	L	Q	.	.	.	.	.	V	F	R	K	D	D	Y	A	V	K	Y	A	V	E	P	L	L	D	G	D	G	P	.	.	.	.	.	.	.	.	.	.	.	.	L	G	D	L	S	V	R	L	K
Query Conservation																															.	.	.	.	.																							.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																															.	.	.	.	.																							.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		T	L	I	R	A	E	D	D	L	T	H	K	L	V	D	I	I	R	I	N	N	R	L	K	Q	N	I	E	A	G	A	P	Q	L	I	I	E	D	L	W	D	L	L	Q	Y	H	V	T	T	Y	I	N	N	E	A	P	G	V	P	P	A	K	H	K	S	G	R	P	L	K	T	L	A	Q	R	L	K
Template Known Secondary structure						B																								S				S																				T	T		T	T					B		T	T	S		B
Template Predicted Secondary structure
Template SS confidence
		291	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions