Job Description P0AF10 Confidence 2.39% Date Thu Jan 5 11:24:51 GMT 2012 Rank 84 Aligned Residues 57 % Identity 16% Template c1h0mD_ PDB info PDB header:transcription/dna Chain: D: PDB Molecule:transcriptional activator protein trar; PDBTitle: three-dimensional structure of the quorum sensing protein2 trar bound to its autoinducer and to its target dna Resolution 3.0 Å

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		29	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	N	R	V	L	E	R	L	N	A	G	K	T	V	R	S	F	L	I	T	A	V	E	L	L	T	E	A	V	N	L	L	V	L	Q	V	F	R	K	D	D	Y	A	V	K	Y	A	V	E	P	L	L	D	G	D	G	P	L	G	D	L	S	V	R	L	K	L	I	Y	G	L	G	V	I
Query Conservation
Alig confidence																			.																						.	.						.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																			.																						.	.						.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		E	A	T	Y	L	R	W	I	A	V	G	K	T	X	E	E	I	.	A	D	V	E	G	V	K	Y	N	S	V	R	V	K	L	R	E	A	X	K	R	.	.	F	D	V	R	S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	K	A	H	L	T	A	L	A	I	R	R	K	L	I
Template Known Secondary structure										T	T	T							.				T	T																	.	.		T		S	S	.	.	.	.	.	.	.	.	.	.	.	.	.	.											T	T
Template Predicted Secondary structure																			.																						.	.						.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		178	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.		.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.			.	.	.	.	220															.	.	.	.	.	.	.	.	.	230	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions