Job Description P77658 Confidence 32.89% Date Thu Jan 5 12:31:27 GMT 2012 Rank 57 Aligned Residues 83 % Identity 18% Template c2v4hA_ PDB info PDB header:transcription Chain: A: PDB Molecule:nf-kappa-b essential modulator; PDBTitle: nemo cc2-lz domain - 1d5 darpin complex Resolution 2.9 Å

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		20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.				.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.
Predicted Secondary structure																																				.	.	.
Query SS confidence																																				.	.	.
Query Sequence		N	A	D	N	L	T	S	S	L	V	K	M	T	Q	A	G	E	T	A	A	N	S	A	G	K	V	T	K	A	T	E	D	E	K	.	.	.	N	A	L	A	K	L	K	A	A	I	D	P	V	G	A	A	I	D	T	V	G	R	R	Y	S	E	L	K	K	F	F	D	K	G	L	I	D	K	E	E	Y	E	F
Query Conservation																																				.	.	.
Alig confidence																																				.	.	.
Template Conservation
Template Sequence		Q	L	E	D	L	R	Q	Q	L	Q	Q	A	E	E	A	L	V	A	K	Q	E	L	I	D	K	L	K	E	E	A	E	Q	H	K	I	V	M	E	T	V	P	V	L	K	A	Q	A	D	I	Y	K	A	D	F	Q	A	E	R	H	A	R	E	K	L	V	E	K	K	E	Y	L	Q	E	Q	L	E	Q	L	Q	R
Template Known Secondary structure																																							T
Template Predicted Secondary structure
Template SS confidence
		252	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.
		97	.	.	100	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	V	R	K	L	N
Query Conservation
Alig confidence
Template Conservation
Template Sequence		E	F	N	K	L	K
Template Known Secondary structure				T	T
Template Predicted Secondary structure
Template SS confidence
		332	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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