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Job DescriptionP77658
Confidence29.69%DateThu Jan 5 12:31:27 GMT 2012
Rank60Aligned Residues310
% Identity10%Templatec1sjjB_
PDB info PDB header:contractile proteinChain: B: PDB Molecule:actinin; PDBTitle: cryo-em structure of chicken gizzard smooth muscle alpha-2 actinin
Resolution20.00 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   4.....10.........20.........30.........40.........50..... ....60.........70...
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Query Sequence  QTSRLAIIIDSTGAKNNADNLTSSLVKMTQAGETAANSAGKVTKATEDEKNA. . . . . . . . . . LAKLKAAIDPVGAAIDTV
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Template Sequence  NNAWGGLEQAEKGYEEWLLNEIRRLERLDHLAEKFRQKASIHESWTDGKEAMLQQKDYETATLSEIKALLKKHEAFESDL
Template Known Secondary structure  TTTTTTTTS
TTTSS
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   366...370.........380.........390.........400.........410.........420.........430.........440.....
 
   74.....80.........90.........100.........110.........120.........130.........140.........150...
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Query Sequence  GRRYSELKKFFDKGLIDKEEYEFLVRKLNETTEELSGVAQAQREAEKAGKLAAAQQEAQAQAFQRMLDKIDPLAAALRNL
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Template Conservation           
      
                        
                    
     
           
Template Sequence  AAHQDRVEQIAAIAQELNELDYYDSPSVNARCQKICDQWDNLGALTQKRREALERTEKLLETIDQLYLEYAKRAAPFNNW
Template Known Secondary structure  TTTTT
TTTTTTT
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   446...450.........460.........470.........480.........490.........500.........510.........520.....
 
   154.....160. ........170.........180.........190.........200.........210..... ....220...
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Query Sequence  EQQHDELN. . . . . . . . . AAFASGKINGSQFENYSRKIQETRRELTGEAQAEREAAKAHDEQVVALQRLIAQ. LDPVGTAF
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Template Sequence  MEGAMEDLQDTFIVHTIEEIQGLTTAHEQFKATLPDADKERQAILGIHNEVSKIVQTYHVNMAGTNPYTTITPQEINGKW
Template Known Secondary structure  TT




SSTTTT

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   526...530.........540.........550.........560.........570.........580.........590.........600.....
 
   224.....230.........240.........250.........260... ......270.........280.........290.........300..
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Query Sequence  NRLVEQQKQLNEAKAKGMLSPEMYEELSGKLRAMRSELEV. TQSQLSKTGMSAKQTAFAMRMLPAQMTDIVVGLSTGQSP
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Template Sequence  EHVRQLVPRRDQALMEEHARQQQNERLRKQFGAQANVIGPWIQTKMEEIGRISIEMHGTLEDQLNHLRQYEKSIVNYKPK
Template Known Secondary structure  TTTTSSTT
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   606...610.........620.........630.........640.........650.........660.........670.........680.....
 
   303......310...
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Query Sequence  FMVLMQQGGHS
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Template Sequence  IDQLEGDHQQI
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   686...690......
 
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No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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