Job Description P78055 Confidence 39.77% Date Thu Jan 5 12:33:06 GMT 2012 Rank 172 Aligned Residues 165 % Identity 15% Template d1bwva1 SCOP info TIM beta/alpha-barrel RuBisCo, C-terminal domain RuBisCo, large subunit, C-terminal domain Resolution 2.40

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		39	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.		.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100		.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.
Predicted Secondary structure																																													.																				.
Query SS confidence																																													.																				.
Query Sequence		L	D	V	V	L	P	Q	L	H	E	A	M	G	G	Q	G	R	L	F	A	Q	V	M	A	T	T	A	E	G	M	V	N	D	A	L	K	L	R	S	I	I	A	D	.	I	V	V	K	V	P	V	T	A	E	G	L	A	A	I	K	M	L	K	.	A	E	G	I	P	T	L	G	T	A	V	Y	G	A	A	Q
Query Conservation																																													.																				.
Alig confidence																																													.																				.
Template Conservation
Template Sequence		T	M	E	A	V	N	K	A	S	A	A	T	G	E	V	K	G	H	Y	L	N	V	T	A	A	T	M	E	E	M	Y	A	R	A	N	F	A	K	E	L	G	S	V	I	I	M	I	D	L	V	I	G	Y	T	A	I	Q	T	M	A	K	W	A	R	D	N	D	M	I	L	H	L	H	R	A	G	N	S	T	Y
Template Known Secondary structure														T	S			B								S	S														T	T		S						G	G	G															T	T								T	T	T
Template Predicted Secondary structure
Template SS confidence
		221	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300
		117														.	.	120	.	.	.	.	.	.	.	.				.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.																		.	.	.	.	.	160	.	.	.
Predicted Secondary structure			.	.	.	.	.	.	.	.	.	.	.	.	.												.	.	.																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence			.	.	.	.	.	.	.	.	.	.	.	.	.												.	.	.																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		G	.	.	.	.	.	.	.	.	.	.	.	.	.	L	L	S	A	L	A	G	A	E	Y	V	.	.	.	A	P	Y	V	N	R	I	D	A	Q	G	G	S	G	I	Q	T	V	T	D	L	H	Q	L	L	K	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	M	H	A	P	Q	A	K	V	L
Query Conservation			.	.	.	.	.	.	.	.	.	.	.	.	.												.	.	.																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence			.	.	.	.	.	.	.	.	.	.	.	.	.												.	.	.				.							.	.	.	.													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																	.							.	.	.	.
Template Sequence		S	R	Q	K	N	H	G	M	N	F	R	V	I	C	K	W	M	R	M	A	G	V	D	H	I	H	A	G	T	V	V	.	G	K	L	E	G	D	.	.	.	.	P	I	I	T	R	G	F	Y	K	T	L	L	L	P	K	L	E	R	N	L	Q	E	G	L	F	F	D	M	E	W	A	S	L	R	K	V	M	P
Template Known Secondary structure			S		T	T	S	S														T		S							S	S	.	S	S	S				.	.	.	.														S					B	T	T	T	T	B		S					T	T
Template Predicted Secondary structure																																	.							.	.	.	.
Template SS confidence
		302	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.		.	.	.	.	.	.					.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.
		164	.	.					.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.		.	.	.	.	.	190	.	.	.	.	.	.	.	.	.		200	.	.	.	.	.	.	.	.	.	210	.	.	.	.
Predicted Secondary structure					.	.	.	.																			.																.
Query SS confidence					.	.	.	.																			.																.
Query Sequence		A	A	S	.	.	.	.	F	K	T	P	R	Q	A	L	D	C	L	L	A	G	C	E	S	I	.	T	L	P	L	D	V	A	Q	Q	M	I	S	Y	P	A	.	V	D	A	A	V	A	K	F	E	Q	D	W	Q	G	A
Query Conservation					.	.	.	.																			.																.
Alig confidence					.	.	.	.												.	.						.								.	.	.	.					.
Template Conservation																				.	.														.	.	.	.
Template Sequence		V	A	S	G	G	I	H	A	G	Q	M	H	Q	L	I	H	Y	L	.	.	G	E	D	V	V	L	Q	F	G	G	G	T	I	.	.	.	.	G	H	P	D	G	I	Q	A	G	A	T	A	N	R	V	A	L	E	A	M
Template Known Secondary structure					S	S			T	T	S									.	.		S	S						S					.	.	.	.	T		T	T
Template Predicted Secondary structure																				.	.														.	.	.	.
Template SS confidence
		377	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.			.	.	.	.	.	400	.	.	.	.	.	.	.					.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions