Job Description P78055 Confidence 40.74% Date Thu Jan 5 12:33:06 GMT 2012 Rank 171 Aligned Residues 106 % Identity 18% Template c3ktsA_ PDB info PDB header:transcriptional regulator Chain: A: PDB Molecule:glycerol uptake operon antiterminator regulatory protein; PDBTitle: crystal structure of glycerol uptake operon antiterminator regulatory2 protein from listeria monocytogenes str. 4b f2365 Resolution 2.75 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		7	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.		.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.
Predicted Secondary structure																					.																																				.
Query SS confidence																					.																																				.
Query Sequence		T	S	D	V	V	A	V	K	A	L	S	R	I	F	P	L	A	G	V	.	T	T	N	P	S	I	I	A	A	G	K	K	P	L	D	V	V	L	P	Q	L	H	E	A	M	G	G	Q	G	R	L	F	A	Q	V	.	M	A	T	T	A	E	G	M	V	N	D	A	L	K	L	R	S	I	I	A	D	I	V	V
Query Conservation																					.																																				.
Alig confidence																					.												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.										.
Template Conservation																																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		K	N	D	D	Y	A	I	D	F	L	C	T	E	I	C	P	D	G	I	I	S	T	R	G	N	A	I	M	K	A	K	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	Q	H	K	M	L	A	I	Q	R	L	F	M	I	D	S	S	A	Y	N	K	G	V	A	L	I	Q	K	V	Q	P	D	C	I	E
Template Known Secondary structure				S										T	T			S					S										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.		T	T											S																	S
Template Predicted Secondary structure																																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		66	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.																.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130
		85	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.		.	.	.	.	.	.		.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																				.							.
Query SS confidence																				.							.
Query Sequence		K	V	P	V	T	A	E	G	L	A	A	I	K	M	L	K	A	E	.	G	I	P	T	L	G	.	T	A	V	Y	G	A	A	Q	G	L	L	S	A	L	A	G	A	E	Y	V	A
Query Conservation																				.							.
Alig confidence									.	.										.							.
Template Conservation									.	.
Template Sequence		L	L	P	G	I	I	P	.	.	E	Q	V	Q	K	M	T	Q	K	L	H	I	P	V	I	A	G	G	L	I	E	T	S	E	Q	V	N	Q	V	I	A	S	G	A	I	A	V	T
Template Known Secondary structure					T	T			.	.																		S	S			S									T	T	T
Template Predicted Secondary structure									.	.
Template SS confidence
		131	.	.	.	.	.	.			.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions