Job Description P78055 Confidence 64.34% Date Thu Jan 5 12:33:06 GMT 2012 Rank 136 Aligned Residues 147 % Identity 16% Template c3b0vD_ PDB info PDB header:oxidoreductase/rna Chain: D: PDB Molecule:trna-dihydrouridine synthase; PDBTitle: trna-dihydrouridine synthase from thermus thermophilus in complex with2 trna Resolution 3.51 Å

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		44	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.		80	.	.	.	.	.	.	.	.	.																		90	.	.	.	.	.	.	.	.	.	100	.	.		.	.
Predicted Secondary structure																																						.											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.														.
Query SS confidence																																						.											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.														.
Query Sequence		P	Q	L	H	E	A	M	G	G	Q	G	R	L	F	A	Q	V	M	A	T	T	A	E	G	M	V	N	D	A	L	K	L	R	S	I	I	.	A	D	I	V	V	K	V	P	V	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	A	E	G	L	A	A	I	K	M	L	K	A	E	.	G	I
Query Conservation																																						.											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.														.
Alig confidence																																						.											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.														.
Template Conservation
Template Sequence		E	R	L	L	A	F	R	P	E	E	H	P	I	A	L	Q	L	A	G	S	D	P	K	S	L	A	E	A	A	R	I	G	E	A	F	G	Y	D	E	I	N	L	N	L	G	C	P	S	E	K	A	Q	E	G	G	Y	G	A	C	L	L	L	D	L	A	R	V	R	E	I	L	K	A	X	G	E	A	V	R	V
Template Known Secondary structure									G	G	G		S								S															T	T		S										S							T		G	G	G	G	G	G														T	T		S	S
Template Predicted Secondary structure
Template SS confidence
		48	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.
		105	.	.	.	.	110	.	.											.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.								.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.
Predicted Secondary structure										.	.	.	.	.	.	.	.	.	.																																		.	.	.	.	.	.	.
Query SS confidence										.	.	.	.	.	.	.	.	.	.																																		.	.	.	.	.	.	.
Query Sequence		P	T	L	G	T	A	V	Y	.	.	.	.	.	.	.	.	.	.	G	A	A	Q	G	L	L	S	A	L	A	G	A	E	Y	V	A	P	Y	V	N	R	I	D	A	Q	G	G	S	G	I	Q	T	.	.	.	.	.	.	.	V	T	D	L	H	Q	L	L	K	M	H	A	P	Q	A	K	V	L	A	A	S	F
Query Conservation										.	.	.	.	.	.	.	.	.	.																																		.	.	.	.	.	.	.
Alig confidence										.	.	.	.	.	.	.	.	.	.																			.															.	.	.	.	.	.	.
Template Conservation																																						.
Template Sequence		P	V	T	V	K	X	R	L	G	L	E	G	K	E	T	Y	R	G	L	A	Q	S	V	E	A	X	A	E	A	G	V	K	V	F	V	V	.	H	A	R	S	A	L	L	A	L	S	T	K	A	N	R	E	I	P	P	L	R	H	D	W	V	H	R	L	K	G	D	F	P	Q	L	T	F	V	T	N	G	G	I
Template Known Secondary structure									S		B	T	T																	T	T							.			S		B		T	T	S		T	T	G	G	G	T	S	S															T	T	S						S	S
Template Predicted Secondary structure																																						.
Template SS confidence
		128	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.		.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.
		168	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	T	P	R	Q	A	L	D	C	L	L	A	G	C	E	S	I	T	L	P	L	D	V	A	Q
Query Conservation
Alig confidence												.
Template Conservation												.
Template Sequence		R	S	L	E	E	A	L	F	H	L	.	K	R	V	D	G	V	X	L	G	R	A	V	Y	E
Template Known Secondary structure			S									.	T	T	S	S					S
Template Predicted Secondary structure												.
Template SS confidence
		207	.	.	210	.	.	.	.	.	.		.	.	.	220	.	.	.	.	.	.	.	.	.	230

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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