Job Description P78055 Confidence 39.61% Date Thu Jan 5 12:33:06 GMT 2012 Rank 174 Aligned Residues 107 % Identity 18% Template c2w27A_ PDB info PDB header:signaling protein Chain: A: PDB Molecule:ykui protein; PDBTitle: crystal structure of the bacillus subtilis ykui protein,2 with an eal domain, in complex with substrate c-di-gmp and3 calcium Resolution 2.80 Å

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		28	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.		.	.	.	.	.	.	.	.	60					.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.
Predicted Secondary structure																										.										.	.	.	.																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																										.										.	.	.	.																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		N	P	S	I	I	A	A	G	K	K	P	L	D	V	V	L	P	Q	L	H	E	A	M	G	.	G	Q	G	R	L	F	A	Q	V	.	.	.	.	M	A	T	T	A	E	G	M	V	N	D	A	L	K	L	R	S	I	I	A	D	I	V	V	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation																										.										.	.	.	.																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																										.										.	.	.	.																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		D	A	N	L	L	M	L	D	H	G	E	S	F	L	E	L	L	K	E	Y	E	A	K	G	I	E	L	H	R	F	V	L	E	I	T	E	H	N	F	E	G	D	I	E	Q	L	Y	H	M	L	A	Y	Y	R	T	Y	G	I	K	I	A	V	D	N	I	G	K	E	S	S	N	L	D	R	I	A	L	L	S	P
Template Known Secondary structure							G	G	G	T	T														T			G	G	G							G	G	G			S														T	T	T									T	T	T	B
Template Predicted Secondary structure
Template SS confidence
		90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.
					85	.	.	.	.							90	.	.	.	.	.	.	.	.	.	100	.	.		.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.		130	.	.	.	.
Predicted Secondary structure		.	.	.						.	.	.	.	.	.														.																												.
Query SS confidence		.	.	.						.	.	.	.	.	.														.																												.
Query Sequence		.	.	.	K	V	P	V	T	.	.	.	.	.	.	A	E	G	L	A	A	I	K	M	L	K	A	E	.	G	I	P	T	L	G	T	A	V	Y	G	A	A	Q	G	L	L	S	A	L	A	G	A	E	Y	V	A	.	P	Y	V	N	R
Query Conservation		.	.	.						.	.	.	.	.	.														.																												.
Alig confidence		.	.	.						.	.	.	.	.	.														.																												.
Template Conservation
Template Sequence		D	L	L	K	I	D	L	Q	A	L	S	P	S	Y	E	H	V	L	Y	S	I	S	L	L	A	R	K	I	G	A	A	L	L	Y	E	D	I	E	A	N	F	Q	L	Q	Y	A	W	R	N	G	G	R	Y	F	Q	G	Y	Y	L	V	S
Template Known Secondary structure		S							T	T																				T										S										T	T						S	T	T	T
Template Predicted Secondary structure
Template SS confidence
		170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions