Job Description P78055 Confidence 56.93% Date Thu Jan 5 12:33:06 GMT 2012 Rank 143 Aligned Residues 134 % Identity 16% Template c2fptA_ PDB info PDB header:oxidoreductase Chain: A: PDB Molecule:dihydroorotate dehydrogenase, mitochondrial; PDBTitle: dual binding mode of a novel series of dhodh inhibitors Resolution 2.40 Å

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		66	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.						.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.				.	.	.	.	.	.
Predicted Secondary structure																		.	.	.	.	.																																																			.	.	.
Query SS confidence																		.	.	.	.	.																																																			.	.	.
Query Sequence		E	G	M	V	N	D	A	L	K	L	R	S	I	I	A	D	.	.	.	.	.	I	V	V	K	V	P	V	T	A	E	G	L	A	A	I	K	M	L	K	A	E	G	I	P	T	L	G	T	A	V	Y	G	A	A	Q	G	L	L	S	A	L	A	G	A	E	Y	V	A	P	Y	.	.	.	V	N	R	I	D	A
Query Conservation																		.	.	.	.	.																																																			.	.	.
Alig confidence																		.	.	.	.	.								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																										.	.	.
Template Conservation																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		R	R	L	L	T	K	V	L	Q	E	R	D	G	L	R	R	V	H	R	P	A	V	L	V	K	I	A	P	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	D	L	T	S	Q	D	K	E	D	I	A	S	V	V	K	E	L	G	I	D	G	L	I	V	T	N	T	T	V	S	R	P	A	G
Template Known Secondary structure														T	S		G	G	G										S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																		T										B	S				T	T
Template Predicted Secondary structure																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		231	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.																			.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.
		138	.	140	.	.														.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.		.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.
Predicted Secondary structure							.	.	.	.	.	.	.	.	.	.	.	.	.																									.
Query SS confidence							.	.	.	.	.	.	.	.	.	.	.	.	.																									.
Query Sequence		Q	G	G	S	G	.	.	.	.	.	.	.	.	.	.	.	.	.	I	Q	T	V	T	D	L	H	Q	L	L	K	M	H	A	P	Q	A	K	V	L	A	A	S	.	F	K	T	P	R	Q	A	L	D	C	L	L	A	G	C	E	S	I	T	L	P	L	D	V	A	Q	Q	M	I	S	Y	P	A	V	D	A	A
Query Conservation							.	.	.	.	.	.	.	.	.	.	.	.	.																									.
Alig confidence							.	.	.	.	.	.	.	.	.	.	.	.	.																									.																												.	.	.
Template Conservation																																																																								.	.	.
Template Sequence		L	Q	G	A	L	R	S	E	T	G	G	L	S	G	K	P	L	R	D	L	S	T	Q	T	I	R	E	M	Y	A	L	T	Q	G	R	V	P	I	I	G	V	G	G	V	S	S	G	Q	D	A	L	E	K	I	R	A	G	A	S	L	V	Q	L	Y	T	A	L	T	F	W	.	.	.	G	P	P	V	V	G	K
Template Known Secondary structure					T	T	T	T	S	S	S																						T	T	T		S						S	S			S											T		S					S							.	.	.		T
Template Predicted Secondary structure																																																																								.	.	.
Template SS confidence
		293	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.				.	.	.	.	.	.	.
		204	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220
Predicted Secondary structure
Query SS confidence
Query Sequence		V	A	K	F	E	Q	D	W	Q	G	A	F	G	R	T	S	I
Query Conservation
Alig confidence
Template Conservation
Template Sequence		V	K	R	E	L	E	A	L	L	K	E	Q	G	F	G	G	V
Template Known Secondary structure													T	T		S	S
Template Predicted Secondary structure
Template SS confidence
		370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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