Job Description P78055 Confidence 34.74% Date Thu Jan 5 12:33:06 GMT 2012 Rank 188 Aligned Residues 155 % Identity 15% Template c2cw6B_ PDB info PDB header:lyase Chain: B: PDB Molecule:hydroxymethylglutaryl-coa lyase, mitochondrial; PDBTitle: crystal structure of human hmg-coa lyase: insights into2 catalysis and the molecular basis for3 hydroxymethylglutaric aciduria Resolution 2.10 Å

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		7	.	.	10	.	.	.	.	.	.	.	.	.	20	.					.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50							.	.	.	.	.	.	.	.	.	60	.	.								.	.	.	.	.	.	.
Predicted Secondary structure																	.	.	.	.																														.	.	.	.	.	.													.	.	.	.	.	.	.
Query SS confidence																	.	.	.	.																														.	.	.	.	.	.													.	.	.	.	.	.	.
Query Sequence		T	S	D	V	V	A	V	K	A	L	S	R	I	F	P	.	.	.	.	L	A	G	V	T	T	N	P	S	I	I	A	A	G	K	K	P	L	D	V	V	L	P	Q	L	H	E	A	M	.	.	.	.	.	.	G	G	Q	G	R	L	F	A	Q	V	M	A	.	.	.	.	.	.	.	T	T	A	E	G	M	V
Query Conservation																	.	.	.	.																														.	.	.	.	.	.													.	.	.	.	.	.	.
Alig confidence																	.	.	.	.																														.	.	.	.	.	.													.	.	.	.	.	.	.
Template Conservation
Template Sequence		T	P	N	L	K	G	F	E	A	A	V	A	A	G	A	K	E	V	V	I	F	G	A	A	S	E	L	F	T	K	K	N	I	N	C	S	I	E	E	S	F	Q	R	F	D	A	I	L	K	A	A	Q	S	A	N	I	S	V	R	G	Y	V	S	C	A	L	G	C	P	Y	E	G	K	I	S	P	A	K	V	A
Template Known Secondary structure				S										T	T		S								S									T	S	S		T	T	T															T	T									S	T	T		B	T	T	T	B	S
Template Predicted Secondary structure
Template SS confidence
		107	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.
		70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.							90	.	.	.	.	.	.	.	.	.	100	.	.							.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.
Predicted Secondary structure																						.	.	.	.	.	.														.	.	.	.	.	.
Query SS confidence																						.	.	.	.	.	.														.	.	.	.	.	.
Query Sequence		N	D	A	L	K	L	R	S	I	I	A	D	I	V	V	K	V	P	V	T	.	.	.	.	.	.	A	E	G	L	A	A	I	K	M	L	K	A	E	.	.	.	.	.	.	G	I	P	T	L	G	T	A	V	Y	G	A	A	Q	G	L	L	S	A	L	A	G	A	E	Y	V	A	P	Y	V	N	R	I	D	A
Query Conservation																						.	.	.	.	.	.														.	.	.	.	.	.
Alig confidence															.							.	.	.	.	.	.														.	.	.	.	.	.
Template Conservation															.
Template Sequence		E	V	T	K	K	F	Y	S	M	G	C	Y	E	.	I	S	L	G	D	T	I	G	V	G	T	P	G	I	M	K	D	M	L	S	A	V	M	Q	E	V	P	L	A	A	L	A	V	H	C	H	D	T	Y	G	Q	A	L	A	N	T	L	M	A	L	Q	M	G	V	S	V	V	D	S	S	V	A	G	L	G	G
Template Known Secondary structure										T	T		S		.						T	T																			S		G	G	G						B		T	T	S												T	T							B	T	T	S
Template Predicted Secondary structure															.
Template SS confidence
		187	.	.	190	.	.	.	.	.	.	.	.	.		200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.
						138	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.
Predicted Secondary structure		.	.	.	.
Query SS confidence		.	.	.	.
Query Sequence		.	.	.	.	Q	G	G	S	G	I	Q	T	V	T	D	L	H	Q	L	L	K	M	H	A	P	Q	A	K	V
Query Conservation		.	.	.	.
Alig confidence		.	.	.	.
Template Conservation
Template Sequence		C	P	Y	A	Q	G	A	S	G	N	L	A	T	E	D	L	V	Y	M	L	E	G	L	G	I	H	T	G	V
Template Known Secondary structure			T	T	S	S	S				B		B											T	T		B
Template Predicted Secondary structure
Template SS confidence
		266	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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