Job Description P76321 Confidence 98.93% Date Thu Jan 5 12:21:47 GMT 2012 Rank 52 Aligned Residues 138 % Identity 26% Template d1ogqa_ SCOP info Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) L domain-like Polygalacturonase inhibiting protein PGIP Resolution 1.7

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		15	.	.	.	.	20	.	.	.	.	.	.	.	.				.	30	.	.	.				.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.							.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.					70	.	.	.	.	.	.	.	.
Predicted Secondary structure																.	.	.						.	.	.																				.	.	.	.	.	.																		.	.	.	.
Query SS confidence																.	.	.						.	.	.																				.	.	.	.	.	.																		.	.	.	.
Query Sequence		H	N	S	K	L	D	L	T	D	L	H	L	G	S	.	.	.	L	P	P	L	P	.	.	.	S	W	I	E	V	L	Y	L	R	H	N	G	L	A	T	I	Q	I	P	.	.	.	.	.	.	K	F	C	K	E	L	E	L	D	F	N	N	Y	M	V	F	P	.	.	.	.	K	V	S	D	G	I	T	Q	V
Query Conservation																.	.	.						.	.	.																				.	.	.	.	.	.																		.	.	.	.
Alig confidence																.	.	.						.	.	.																				.	.	.	.	.	.																		.	.	.	.
Template Conservation
Template Sequence		R	V	N	N	L	D	L	S	G	L	N	L	P	K	P	Y	P	I	P	S	S	L	A	N	L	P	Y	L	N	F	L	Y	I	G	G	I	N	N	L	V	G	P	I	P	P	A	I	A	K	L	T	Q	L	H	Y	L	Y	I	T	H	T	N	V	S	G	A	I	P	D	F	L	S	Q	I	K	T	L	V	T	L
Template Known Secondary structure														S	S						G	G	G	G	G		T	T		S								T	T			S				G	G	G	G	G		T	T		S															G	G	G	G	G		T	T
Template Predicted Secondary structure
Template SS confidence
		51	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130
		79	80	.	.	.	.	.	.
Predicted Secondary structure										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		S	V	D	N	N	L	I	S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		D	F	S	Y	N	A	L	S	G	T	L	P	P	S	I	S	S	L	P	N	L	V	G	I	T	F	D	G	N	R	I	S	G	A	I	P	D	S	Y	G	S	F	S	K	L	F	T	S	M	T	I	S	R	N	R	L	T	G	K	I	P	P	T	F	A	N	L	N	L	A	F	V	D	L	S	R	N	M	L	E
Template Known Secondary structure					S	S				S				G	G	G	G	G		T	T								S	S								G	G	G	G				T	T								S	S								G	G	G	G	G				S						S	S
Template Predicted Secondary structure
Template SS confidence
		131	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
																													87	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.		.	.	.	110	.	.				.	.	.	.	.	.	.	120	.	.	.	.	.	.		.	.	.	130	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																					.							.	.	.															.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																					.							.	.	.															.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	R	V	D	S	S	P	S	K	A	M	T	I	S	I	Y	R	N	K	I	W	.	X	I	P	A	M	P	.	.	.	E	T	T	K	L	F	N	C	G	D	N	K	I	K	.	E	I	Q	Y	F	P	N	H
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																					.							.	.	.															.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																					.							.	.	.															.						.	.	.
Template Conservation																																																																															.	.	.
Template Sequence		G	D	A	S	V	L	F	G	S	D	K	N	T	Q	K	I	H	L	A	K	N	S	L	A	F	D	L	G	K	V	G	L	S	K	N	L	N	G	L	D	L	R	N	N	R	I	Y	G	T	L	P	Q	G	L	T	Q	L	K	F	L	H	S	L	N	V	S	F	N	N	L	C	G	E	I	P	Q	G	.	.	.
Template Known Secondary structure					G	G	G			T	T	S			S						S	S					B	G	G	G					T	T								S	S								G	G	G	G	G		T	T								S	S									S	.	.	.
Template Predicted Secondary structure																																																																															.	.	.
Template SS confidence
		211	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.
		135	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	E	K	A	R	M	E	C	D	I	E	V	V	S	A	I	Y	S	N	K	E	L	L	F	K	E	C	N
Query Conservation
Alig confidence		.	.	.	.	.	.	.
Template Conservation		.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	G	N	L	Q	R	F	D	V	S	A	Y	A	N	N	K	C	L	C	G	S	P
Template Known Secondary structure		.	.	.	.	.	.	.	T	T	G	G	G	S		G	G	G	T		S	S	S				S	T	T
Template Predicted Secondary structure		.	.	.	.	.	.	.
Template SS confidence
									288	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions