Job Description P76321 Confidence 99.25% Date Thu Jan 5 12:21:47 GMT 2012 Rank 40 Aligned Residues 102 % Identity 18% Template d1dcea3 SCOP info Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) L domain-like Rab geranylgeranyltransferase alpha-subunit, C-terminal domain Resolution 2.00

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		17	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.			.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.					.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.			.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.
Predicted Secondary structure																		.	.																					.	.	.	.																				.	.
Query SS confidence																		.	.																					.	.	.	.																				.	.
Query Sequence		S	K	L	D	L	T	D	L	H	L	G	S	L	P	P	L	.	.	P	S	W	I	E	V	L	Y	L	R	H	N	G	L	A	T	I	Q	I	P	.	.	.	.	K	F	C	K	E	L	E	L	D	F	N	N	Y	M	V	F	P	K	V	.	.	S	D	G	I	T	Q	V	S	V	D	N	N	L	I	S	R	V
Query Conservation																		.	.																					.	.	.	.																				.	.
Alig confidence																		.	.																					.	.	.	.																				.	.
Template Conservation
Template Sequence		R	V	L	H	L	A	H	K	D	L	T	V	L	C	H	L	E	Q	L	L	L	V	T	H	L	D	L	S	H	N	R	L	R	A	L	P	P	A	L	A	A	L	R	C	L	E	V	L	Q	A	S	D	N	A	L	E	N	V	D	G	V	A	N	L	P	R	L	Q	E	L	L	L	C	N	N	R	L	Q	Q	S
Template Known Secondary structure							T	T	S			S	S				G	G	G	G	T	T								S	S							G	G	G	G	G		T	T								S	S						G	G	G	T	T		S	S								S	S				S	S
Template Predicted Secondary structure
Template SS confidence
		444	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.
		89						90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.
Predicted Secondary structure			.	.	.	.	.
Query SS confidence			.	.	.	.	.
Query Sequence		D	.	.	.	.	.	S	S	P	S	K	A	M	T	I	S	I	Y	R	N	K	I	W	X	I	P	A	M	P	E	T	T	K	L	F
Query Conservation			.	.	.	.	.
Alig confidence			.	.	.	.	.
Template Conservation
Template Sequence		A	A	I	Q	P	L	V	S	C	P	R	L	V	L	L	N	L	Q	G	N	S	L	C	Q	E	E	G	I	Q	E	R	L	A	E	M
Template Known Secondary structure		S	T	T	G	G	G	G	G		T	T							T	T	S	G	G	G	G	S	S	S		T	T
Template Predicted Secondary structure
Template SS confidence
		524	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions