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Job DescriptionP76321
Confidence98.96%DateThu Jan 5 12:21:47 GMT 2012
Rank51Aligned Residues136
% Identity25%Templatec3o6nA_
PDB info PDB header:protein bindingChain: A: PDB Molecule:apl1; PDBTitle: crystal structure of apl1 leucine-rich repeat domain
Resolution1.85 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   15....20.........30.. .......40.........50.. .......60......... 70.........80.
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Query Sequence  HNSKLDLTDLHLGSLPPL. . . . PSWIEVLYLRHNGLATIQIP. . . . . KFCKELELDFNNYMVFP. . . . KVSDGITQVSVD
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Template Conservation 

  
 

 
 
  

   
  
  
  



 
 
  
    
  
  
  
 
  
 
                    
Template Sequence  NQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLE
Template Known Secondary structure 

SS
S
T



S
TTS



TTTTTT
TT



SS





TTTTTT
TT



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   179180.........190.........200.........210.........220.........230.........240.........250........
 
   82....
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Query Sequence  NNLIS. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Query Conservation   
 
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Template Conservation                                                                                  
Template Sequence  RNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLAIPI
Template Known Secondary structure  SS





TTTTTT
TT



SS


B

TTTTSS
TT



SS

SB

GGG
TT
S

SS

S

S
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   259260.........270.........280.........290.........300.........310.........320.........330........
 
  
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Query Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Query Conservation  ................................................................................
Template Conservation                                                                                
 
Template Sequence  AVEELDASHNSINVVRGPVNVELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLV
Template Known Secondary structure  S
S

SS






SS



SS




GGGGG
TT
S

SS


SGGGTT
SS



SS


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   339340.........350.........360.........370.........380.........390.........400.........410........
 
   87..90.........100.........110. ........120.........130.........140.........150.........160
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Query Sequence  . . . RVDSSPSKAMTISIYRNKIWXIPAM. . . PETTKLFNCGDNKIKEIQYFPNHLEKARMECDIEVVSAIYSNKELLFKE
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Template Conservation             
  
 
  
    
      
  
  
 

 
 
  
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Template Sequence  ALNLYGQPIPTLKVLDLSHNHLLHVERNQPQFDRLENLYLDHNSIVTLK. . . . . . . . . . . LSTHHTLKNLTLSHNDWDCN
Template Known Secondary structure 
SSS

TT



SS




GGGTT
S

SS





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TT


S

SS
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   419420.........430.........440.........450.........460....... ..470.........480.......
 
   161
Predicted Secondary structure 
Query SS confidence 
Query Sequence  C
Query Conservation   
Alig confidence 
Template Conservation   
Template Sequence  S
Template Known Secondary structure 
Template Predicted Secondary structure 
Template SS confidence 
   488
 
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No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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