Job Description P76321 Confidence 98.96% Date Thu Jan 5 12:21:47 GMT 2012 Rank 51 Aligned Residues 136 % Identity 25% Template c3o6nA_ PDB info PDB header:protein binding Chain: A: PDB Molecule:apl1; PDBTitle: crystal structure of apl1 leucine-rich repeat domain Resolution 1.85 Å

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		15	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.					.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.						.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.					70	.	.	.	.	.	.	.	.	.	80	.
Predicted Secondary structure																				.	.	.	.																					.	.	.	.	.																		.	.	.	.
Query SS confidence																				.	.	.	.																					.	.	.	.	.																		.	.	.	.
Query Sequence		H	N	S	K	L	D	L	T	D	L	H	L	G	S	L	P	P	L	.	.	.	.	P	S	W	I	E	V	L	Y	L	R	H	N	G	L	A	T	I	Q	I	P	.	.	.	.	.	K	F	C	K	E	L	E	L	D	F	N	N	Y	M	V	F	P	.	.	.	.	K	V	S	D	G	I	T	Q	V	S	V	D
Query Conservation																				.	.	.	.																					.	.	.	.	.																		.	.	.	.
Alig confidence																				.	.	.	.																					.	.	.	.	.																		.	.	.	.
Template Conservation
Template Sequence		N	Q	K	I	V	T	F	K	N	S	T	M	R	K	L	P	A	A	L	L	D	S	F	R	Q	V	E	L	L	N	L	N	D	L	Q	I	E	E	I	D	T	Y	A	F	A	Y	A	H	T	I	Q	K	L	Y	M	G	F	N	A	I	R	Y	L	P	P	H	V	F	Q	N	V	P	L	L	T	V	L	V	L	E
Template Known Secondary structure				S						S				S				T										S					T	T	S							T	T	T	T	T	T		T	T								S	S							T	T	T	T	T	T		T	T
Template Predicted Secondary structure
Template SS confidence
		179	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.
		82	.	.	.	.
Predicted Secondary structure							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		N	N	L	I	S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		R	N	D	L	S	S	L	P	R	G	I	F	H	N	T	P	K	L	T	T	L	S	M	S	N	N	N	L	E	R	I	E	D	D	T	F	Q	A	T	T	S	L	Q	N	L	Q	L	S	S	N	R	L	T	H	V	D	L	S	L	I	P	S	L	F	H	A	N	V	S	Y	N	L	L	S	T	L	A	I	P	I
Template Known Secondary structure		S	S							T	T	T	T	T	T		T	T								S	S				B			T	T	T	T	S	S		T	T								S	S			S	B			G	G	G		T	T		S						S	S			S						S
Template Predicted Secondary structure
Template SS confidence
		259	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		A	V	E	E	L	D	A	S	H	N	S	I	N	V	V	R	G	P	V	N	V	E	L	T	I	L	K	L	Q	H	N	N	L	T	D	T	A	W	L	L	N	Y	P	G	L	V	E	V	D	L	S	Y	N	E	L	E	K	I	M	Y	H	P	F	V	K	M	Q	R	L	E	R	L	Y	I	S	N	N	R	L	V
Template Known Secondary structure		S		S						S	S											S	S								S	S						G	G	G	G	G		T	T		S						S	S							S	G	G	G	T	T		S	S								S	S
Template Predicted Secondary structure
Template SS confidence
		339	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.
					87	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.				.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160
Predicted Secondary structure		.	.	.																										.	.	.
Query SS confidence		.	.	.																										.	.	.
Query Sequence		.	.	.	R	V	D	S	S	P	S	K	A	M	T	I	S	I	Y	R	N	K	I	W	X	I	P	A	M	.	.	.	P	E	T	T	K	L	F	N	C	G	D	N	K	I	K	E	I	Q	Y	F	P	N	H	L	E	K	A	R	M	E	C	D	I	E	V	V	S	A	I	Y	S	N	K	E	L	L	F	K	E
Query Conservation		.	.	.																										.	.	.
Alig confidence		.	.	.																										.	.	.																			.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																																			.	.	.	.	.	.	.	.	.	.	.
Template Sequence		A	L	N	L	Y	G	Q	P	I	P	T	L	K	V	L	D	L	S	H	N	H	L	L	H	V	E	R	N	Q	P	Q	F	D	R	L	E	N	L	Y	L	D	H	N	S	I	V	T	L	K	.	.	.	.	.	.	.	.	.	.	.	L	S	T	H	H	T	L	K	N	L	T	L	S	H	N	D	W	D	C	N
Template Known Secondary structure						S	S	S			T	T								S	S						G	G	G					T	T		S						S	S							.	.	.	.	.	.	.	.	.	.	.			T	T				S						S	S
Template Predicted Secondary structure																																																			.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		419	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.												.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.
		161
Predicted Secondary structure
Query SS confidence
Query Sequence		C
Query Conservation
Alig confidence
Template Conservation
Template Sequence		S
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		488

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions