Job Description P76321 Confidence 98.80% Date Thu Jan 5 12:21:47 GMT 2012 Rank 60 Aligned Residues 141 % Identity 27% Template c3o53A_ PDB info PDB header:protein binding Chain: A: PDB Molecule:protein lrim1; PDBTitle: crystal structure of lrim1 leucine-rich repeat domain Resolution 2.00 Å

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		14	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.					.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.
Predicted Secondary structure																					.	.	.	.																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																					.	.	.	.																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		L	H	N	S	K	L	D	L	T	D	L	H	L	G	S	L	P	P	L	.	.	.	.	P	S	W	I	E	V	L	Y	L	R	H	N	G	L	A	T	I	Q	I	P	K	F	C	K	E	L	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation																					.	.	.	.																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																					.	.	.	.																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		W	N	V	K	E	L	D	L	S	G	N	P	L	S	Q	I	S	A	A	D	L	A	P	F	T	K	L	E	L	L	N	L	S	S	N	V	L	Y	E	T	L	D	L	E	S	L	S	T	L	R	T	L	D	L	N	N	N	Y	V	Q	E	L	L	V	G	P	S	I	E	T	L	H	A	A	N	N	N	I	S	R
Template Known Secondary structure		G	G		S					T	T	S											T	T		T	T							T	T	S									T	T		T	T								S	S									T	T								S	S			S
Template Predicted Secondary structure
Template SS confidence
		56	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.
																																											59	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.			.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																			.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																			.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	E	L	D	F	N	N	Y	M	V	F	P	K	V	S	D	G	I	T	Q	V	S	V	D	N	N	L	I	S	R	V	D	S	S	P	.	.	S	K	A
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																			.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																			.	.
Template Conservation
Template Sequence		V	S	C	S	R	G	Q	G	K	K	N	I	Y	L	A	N	N	K	I	T	M	L	R	D	L	D	E	G	C	R	S	R	V	Q	Y	L	D	L	K	L	N	E	I	D	T	V	N	F	A	E	L	A	A	S	S	D	T	L	E	H	L	N	L	Q	Y	N	F	I	Y	D	V	K	G	Q	V	V	F	A	K	L
Template Known Secondary structure								S	S								S	S				S	G	G	G	B		T	G	G	G	S	S							T	T	S							G	G	G	G	G	G	G	T	T	T							T	T	S												T	T
Template Predicted Secondary structure
Template SS confidence
		136	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.
		96	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.				.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.
Predicted Secondary structure																		.	.	.
Query SS confidence																		.	.	.
Query Sequence		M	T	I	S	I	Y	R	N	K	I	W	X	I	P	A	M	.	.	.	P	E	T	T	K	L	F	N	C	G	D	N	K	I	K	E	I	Q	Y	F	P	N	H	L	E	K	A	R	M	E	C	D	I	E	V	V	S	A	I	Y	S	N	K	E	L	L	F	K	E	C	N	S
Query Conservation																		.	.	.
Alig confidence																		.	.	.																				.	.	.	.	.	.	.	.	.
Template Conservation																																								.	.	.	.	.	.	.	.	.
Template Sequence		K	T	L	D	L	S	S	N	K	L	A	F	M	G	P	E	F	Q	S	A	A	G	V	T	W	I	S	L	R	N	N	K	L	V	L	I	E	K	.	.	.	.	.	.	.	.	.	A	L	R	F	S	Q	N	L	E	H	F	D	L	R	G	N	G	F	H	C	G	T	L	R
Template Known Secondary structure								S	S							G	G	G	G	G	G	T	T		S					T	T	S							T	.	.	.	.	.	.	.	.	.	T					T	T							T	T				B
Template Predicted Secondary structure																																								.	.	.	.	.	.	.	.	.
Template SS confidence
		216	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.										.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions