Job Description P76321 Confidence 99.19% Date Thu Jan 5 12:21:47 GMT 2012 Rank 41 Aligned Residues 148 % Identity 19% Template c3m18A_ PDB info PDB header:immune system Chain: A: PDB Molecule:variable lymphocyte receptor a diversity region; PDBTitle: crystal structure of variable lymphocyte receptor vlra.r2.1 in complex2 with hen egg lysozyme Resolution 1.95 Å

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		15	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.		.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.						.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.					.	.	.	.	.	.	.	.	80	.	.	.	.
Predicted Secondary structure																			.																						.	.	.	.	.																				.	.	.	.
Query SS confidence																			.																						.	.	.	.	.																				.	.	.	.
Query Sequence		H	N	S	K	L	D	L	T	D	L	H	L	G	S	L	P	P	.	L	P	S	W	I	E	V	L	Y	L	R	H	N	G	L	A	T	I	Q	I	P	.	.	.	.	.	K	F	C	K	E	L	E	L	D	F	N	N	Y	M	V	F	P	K	V	.	.	.	.	S	D	G	I	T	Q	V	S	V	D	N	N	L
Query Conservation																			.																						.	.	.	.	.																				.	.	.	.
Alig confidence																			.																						.	.	.	.	.																				.	.	.	.
Template Conservation
Template Sequence		G	K	K	E	V	D	C	Q	G	K	S	L	D	S	V	P	S	G	I	P	A	D	T	E	K	L	D	L	Q	S	T	G	L	A	T	L	S	D	A	T	F	R	G	L	T	K	L	T	W	L	N	L	D	Y	N	Q	L	Q	T	L	S	A	G	V	F	D	D	L	T	E	L	G	T	L	G	L	A	N	N	Q
Template Known Secondary structure		T	T	T					T	T				S	S			T	T			T	T							T	T	S							T	T	T	T	T	T		T	T							T	T	S							T	T	T	T	T	T		T	T							T	T	S
Template Predicted Secondary structure
Template SS confidence
		14	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.
		85	.	.	.	.	90																													.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.					.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.
Predicted Secondary structure								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																						.	.	.	.
Query SS confidence								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																						.	.	.	.
Query Sequence		I	S	R	V	D	S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S	P	S	K	A	M	T	I	S	I	Y	R	N	K	I	W	X	I	P	A	M	.	.	.	.	P	E	T	T	K	L	F	N	C	G	D	N	K	I	K	E	I	Q	Y	F	P
Query Conservation								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																						.	.	.	.
Alig confidence								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																						.	.	.	.																					.
Template Conservation																																																																																	.
Template Sequence		L	A	S	L	P	L	G	V	F	D	H	L	T	Q	L	D	K	L	Y	L	G	G	N	Q	L	K	S	L	P	S	G	V	F	D	R	L	T	K	L	K	E	L	R	L	N	T	N	Q	L	Q	S	I	P	A	G	A	F	D	K	L	T	N	L	Q	T	L	S	L	S	T	N	Q	L	Q	S	V	P	H	G	.
Template Known Secondary structure							T	T	T	T	T	T		T	T								S	S							T	T	T	T	T	T		T	T								S	S							T	T	T	T	T	T		T	T								S	S			S				T	T	.
Template Predicted Secondary structure																																																																																	.
Template SS confidence
		94	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.
		133	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170
Predicted Secondary structure
Query SS confidence
Query Sequence		N	H	L	E	K	A	R	M	E	C	D	I	E	V	V	S	A	I	Y	S	N	K	E	L	L	F	K	E	C	N	S	F	E	E	T	F	L	Y
Query Conservation
Alig confidence		.	.	.	.	.	.	.
Template Conservation		.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	A	F	D	R	L	G	K	L	Q	T	I	T	L	F	G	N	Q	F	D	C	S	R	C	E	T	L	Y	L	S	Q	W
Template Known Secondary structure		.	.	.	.	.	.	.	T	T	T	T		T	T								S	S		B		T	T	S	T	T
Template Predicted Secondary structure		.	.	.	.	.	.	.
Template SS confidence
									173	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions