Job Description P76321 Confidence 99.60% Date Thu Jan 5 12:21:47 GMT 2012 Rank 16 Aligned Residues 146 % Identity 18% Template c3e6jA_ PDB info PDB header:immune system Chain: A: PDB Molecule:variable lymphocyte receptor diversity region; PDBTitle: crystal structure of variable lymphocyte receptor (vlr) rbc36 in2 complex with h-trisaccharide Resolution 1.67 Å

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		17	.	.	20	.	.	.	.	.	.	.	.	.	30	.		.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.						.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.					70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.
Predicted Secondary structure																	.																						.	.	.	.	.																		.	.	.	.
Query SS confidence																	.																						.	.	.	.	.																		.	.	.	.
Query Sequence		S	K	L	D	L	T	D	L	H	L	G	S	L	P	P	.	L	P	S	W	I	E	V	L	Y	L	R	H	N	G	L	A	T	I	Q	I	P	.	.	.	.	.	K	F	C	K	E	L	E	L	D	F	N	N	Y	M	V	F	P	.	.	.	.	K	V	S	D	G	I	T	Q	V	S	V	D	N	N	L	I	S
Query Conservation																	.																						.	.	.	.	.																		.	.	.	.
Alig confidence																	.																						.	.	.	.	.																		.	.	.	.
Template Conservation
Template Sequence		T	T	V	D	C	R	S	K	R	H	A	S	V	P	A	G	I	P	T	N	A	Q	I	L	Y	L	H	D	N	Q	I	T	K	L	E	P	G	V	F	D	S	L	I	N	L	K	E	L	Y	L	G	S	N	Q	L	G	A	L	P	V	G	V	F	D	S	L	T	Q	L	T	V	L	D	L	G	T	N	Q	L	T
Template Known Secondary structure		T					T	T	S			S	S			S				T	T		S						S	S							T	T	T	T	T	T		T	T								S	S							T	T	T	T	T	T		T	T								S	S
Template Predicted Secondary structure
Template SS confidence
		31	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110
		87	.	.	90	.	.					.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.				.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.
Predicted Secondary structure								.	.	.	.																					.	.	.
Query SS confidence								.	.	.	.																					.	.	.
Query Sequence		R	V	D	S	S	P	.	.	.	.	S	K	A	M	T	I	S	I	Y	R	N	K	I	W	X	I	P	A	M	P	.	.	.	E	T	T	K	L	F	N	C	G	D	N	K	I	K	E	I	Q	Y	F	P	N	H	L	E	K	A	R	M	E	C	D	I	E	V	V	S	A	I	Y	S	N	K	E	L	L	F	K
Query Conservation								.	.	.	.																					.	.	.
Alig confidence								.	.	.	.																					.	.	.																				.	.	.	.	.	.	.	.
Template Conservation																																																						.	.	.	.	.	.	.	.
Template Sequence		V	L	P	S	A	V	F	D	R	L	V	H	L	K	E	L	F	M	C	C	N	K	L	T	E	L	P	R	G	I	E	R	L	T	H	L	T	H	L	A	L	D	Q	N	Q	L	K	S	I	P	H	G	.	.	.	.	.	.	.	.	A	F	D	R	L	S	S	L	T	H	A	Y	L	F	G	N	P	W	D	C
Template Known Secondary structure					T	T	T	T	T	T		T	T								S	S				S			T	T	G	G	G		T	T		S						S	S							T	T	.	.	.	.	.	.	.	.	T	T	T	T		T	T							T	T	S		B		T
Template Predicted Secondary structure																																																						.	.	.	.	.	.	.	.
Template SS confidence
		111	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.									.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.
		160	.	.	.	.	.	.	.	.	.	170
Predicted Secondary structure
Query SS confidence
Query Sequence		E	C	N	S	F	E	E	T	F	L	Y
Query Conservation
Alig confidence
Template Conservation
Template Sequence		E	C	R	D	I	M	Y	L	R	N	W
Template Known Secondary structure		T	B	G	G	G
Template Predicted Secondary structure
Template SS confidence
		183	.	.	.	.	.	.	190	.	.	.

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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