Job Description P76321 Confidence 99.69% Date Thu Jan 5 12:21:47 GMT 2012 Rank 6 Aligned Residues 116 % Identity 17% Template c3a79B_ PDB info PDB header:immune system Chain: B: PDB Molecule:toll-like receptor 6, variable lymphocyte receptor b; PDBTitle: crystal structure of tlr2-tlr6-pam2csk4 complex Resolution 2.90 Å

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		17	.	.	20	.	.	.	.	.	.	.	.	.	30	.		.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.						.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.					.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.
Predicted Secondary structure																	.																						.	.	.	.	.																	.	.	.	.
Query SS confidence																	.																						.	.	.	.	.																	.	.	.	.
Query Sequence		S	K	L	D	L	T	D	L	H	L	G	S	L	P	P	.	L	P	S	W	I	E	V	L	Y	L	R	H	N	G	L	A	T	I	Q	I	P	.	.	.	.	.	K	F	C	K	E	L	E	L	D	F	N	N	Y	M	V	F	.	.	.	.	P	K	V	S	D	G	I	T	Q	V	S	V	D	N	N	L	I	S
Query Conservation																	.																						.	.	.	.	.																	.	.	.	.
Alig confidence																	.																						.	.	.	.	.																	.	.	.	.
Template Conservation
Template Sequence		S	M	V	D	Y	S	N	R	N	L	T	H	V	P	K	D	L	P	P	R	T	K	A	L	S	L	S	Q	N	S	I	S	E	L	R	M	P	D	I	S	F	L	S	E	L	R	V	L	R	L	S	H	N	R	I	R	S	L	D	F	H	V	F	L	F	N	Q	D	L	E	Y	L	D	V	S	H	N	R	L	Q
Template Known Secondary structure							T	T	S				S			T	T	S		T	T								S	S							G	G	G	T	T	T		T	T								S								T	T	T	T	T	T		T	T							T	T	S
Template Predicted Secondary structure
Template SS confidence
		34	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.
		87	.	.		90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.						110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.
Predicted Secondary structure					.																					.	.	.	.	.
Query SS confidence					.																					.	.	.	.	.
Query Sequence		R	V	D	.	S	S	P	S	K	A	M	T	I	S	I	Y	R	N	K	I	W	X	I	P	.	.	.	.	.	A	M	P	E	T	T	K	L	F	N	C	G	D	N	K	I	K	E	I	Q	Y	F	P
Query Conservation					.																					.	.	.	.	.
Alig confidence					.																					.	.	.	.	.
Template Conservation
Template Sequence		N	I	S	C	C	P	M	A	S	L	R	H	L	D	L	S	F	N	D	F	D	V	L	P	V	C	K	E	F	G	N	L	T	K	L	T	F	L	G	L	S	A	A	K	F	R	Q	L	D	L	L	P
Template Known Secondary structure					S				T	T		S						S	S			S	B					G	G	G	G	G		T	T									S	B			T	T	T	T	G	G
Template Predicted Secondary structure
Template SS confidence
		114	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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