Job Description P76321 Confidence 99.53% Date Thu Jan 5 12:21:47 GMT 2012 Rank 23 Aligned Residues 148 % Identity 16% Template c3a79A_ PDB info PDB header:immune system Chain: A: PDB Molecule:toll-like receptor 2, variable lymphocyte receptor b; PDBTitle: crystal structure of tlr2-tlr6-pam2csk4 complex Resolution 2.90 Å

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		15	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.							.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50					.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.		70	.	.	.	.	.	.	.	.	.	80	.	.	.
Predicted Secondary structure																					.	.	.	.	.	.																		.	.	.	.																				.
Query SS confidence																					.	.	.	.	.	.																		.	.	.	.																				.
Query Sequence		H	N	S	K	L	D	L	T	D	L	H	L	G	S	L	P	P	L	P	.	.	.	.	.	.	S	W	I	E	V	L	Y	L	R	H	N	G	L	A	T	I	Q	.	.	.	.	I	P	K	F	C	K	E	L	E	L	D	F	N	N	Y	M	V	F	P	.	K	V	S	D	G	I	T	Q	V	S	V	D	N	N
Query Conservation																					.	.	.	.	.	.																		.	.	.	.																				.
Alig confidence																					.	.	.	.	.	.																		.	.	.	.																				.
Template Conservation
Template Sequence		S	L	Q	T	L	V	L	S	Q	N	H	L	R	S	M	Q	K	T	G	E	I	L	L	T	L	K	N	L	T	S	L	D	I	S	R	N	T	F	H	P	M	P	D	S	C	Q	W	P	E	K	M	R	F	L	N	L	S	S	T	G	I	R	V	V	K	T	C	I	P	Q	T	L	E	V	L	D	V	S	N	N
Template Known Secondary structure		T							T	T	S												G	G	G		T	T								S								S						T	T							T	T								T	T	S		T	T		S						S	S
Template Predicted Secondary structure
Template SS confidence
		388	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.
		84	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.			.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.
Predicted Secondary structure																														.	.
Query SS confidence																														.	.
Query Sequence		L	I	S	R	V	D	S	S	P	S	K	A	M	T	I	S	I	Y	R	N	K	I	W	X	I	P	A	M	.	.	P	E	T	T	K	L	F	N	C	G	D	N	K	I	K	E	I	Q	Y	F	P	N	H	L	E	K	A	R	M	E	C	D	I	E	V	V	S	A	I	Y	S	N	K	E	L	L	F	K	E	C
Query Conservation																														.	.
Alig confidence																														.	.																					.	.	.	.	.	.	.	.
Template Conservation																																																				.	.	.	.	.	.	.	.
Template Sequence		N	L	D	S	F	S	L	F	L	P	R	L	Q	E	L	Y	I	S	R	N	K	L	K	T	L	P	D	A	S	L	F	P	V	L	L	V	M	K	I	A	S	N	Q	L	K	S	V	P	D	G	.	.	.	.	.	.	.	.	I	F	D	R	L	T	S	L	Q	K	I	W	L	H	T	N	P	W	D	C	S	C
Template Known Secondary structure				S							T	T								S	S			S	S				T	T	S		T	T								S	S			S				S	S	.	.	.	.	.	.	.	.		T	T	S		T	T								S							T
Template Predicted Secondary structure																																																				.	.	.	.	.	.	.	.
Template SS confidence
		468	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.									.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.
		162	.	.	.	.	.	.	.	170
Predicted Secondary structure
Query SS confidence
Query Sequence		N	S	F	E	E	T	F	L	Y
Query Conservation
Alig confidence
Template Conservation
Template Sequence		P	R	I	D	Y	L	S	R	W
Template Known Secondary structure		T	T
Template Predicted Secondary structure
Template SS confidence
		540	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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