Job Description P76321 Confidence 99.65% Date Thu Jan 5 12:21:47 GMT 2012 Rank 10 Aligned Residues 133 % Identity 14% Template c2z64A_ PDB info PDB header:immune system Chain: A: PDB Molecule:toll-like receptor 4; PDBTitle: crystal structure of mouse tlr4 and mouse md-2 complex Resolution 2.84 Å

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		17	.	.	20	.	.	.	.	.	.	.	.	.	30	.		.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.
Predicted Secondary structure																	.																																																														.	.	.
Query SS confidence																	.																																																														.	.	.
Query Sequence		S	K	L	D	L	T	D	L	H	L	G	S	L	P	P	.	L	P	S	W	I	E	V	L	Y	L	R	H	N	G	L	A	T	I	Q	I	P	K	F	C	K	E	L	E	L	D	F	N	N	Y	M	V	F	P	K	V	S	D	G	I	T	Q	V	S	V	D	N	N	L	I	S	R	V	D	S	S	P	.	.	.
Query Conservation																	.																																																														.	.	.
Alig confidence																	.																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																												.	.	.
Template Conservation																																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		I	T	Y	Q	C	M	D	Q	K	L	S	K	V	P	D	D	I	P	S	S	T	K	N	I	D	L	S	F	N	P	L	K	I	L	K	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S	Y	S	F	S	N	F	S	E	L	Q	W	L	D	L	S	R	C	E	I	E	T	I	E	D	K	A	W	H	G
Template Known Secondary structure		T					S	S	S			S	S			S	S	S		S	S								S	S							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T	T	T	T	S	S		T	T							S	S								T	T	T	T	T	T
Template Predicted Secondary structure																																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		35	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.																70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.
			93	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.					110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.									.	.
Predicted Secondary structure		.																		.	.	.	.																																																	.	.	.	.	.	.	.	.
Query SS confidence		.																		.	.	.	.																																																	.	.	.	.	.	.	.	.
Query Sequence		.	S	K	A	M	T	I	S	I	Y	R	N	K	I	W	X	I	P	.	.	.	.	A	M	P	E	T	T	K	L	F	N	C	G	D	N	K	I	K	E	I	Q	Y	F	P	N	H	L	E	K	A	R	M	E	C	D	I	E	V	V	S	A	I	Y	S	N	K	E	L	L	.	.	.	.	.	.	.	.	F	K
Query Conservation		.																		.	.	.	.																																																	.	.	.	.	.	.	.	.
Alig confidence		.																		.	.	.	.																							.	.	.	.	.	.	.	.																			.	.	.	.	.	.	.	.
Template Conservation																																														.	.	.	.	.	.	.	.
Template Sequence		L	H	H	L	S	N	L	I	L	T	G	N	P	I	Q	S	F	S	P	G	S	F	S	G	L	T	S	L	E	N	L	V	A	V	E	T	K	L	A	S	L	E	S	F	.	.	.	.	.	.	.	.	P	I	G	Q	L	I	T	L	K	K	L	N	V	A	H	N	F	I	H	S	C	K	L	P	A	Y	F	S
Template Known Secondary structure			T	T							T	T								T	T	T	T	T	T		T	T							T	T	S					T	T	T		.	.	.	.	.	.	.	.			T	T		T	T								S	S									G	G	G	G
Template Predicted Secondary structure																																														.	.	.	.	.	.	.	.
Template SS confidence
		100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.									.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.
		160	.	.	.	.	.	.	.	.	.	170	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	C	N	S	F	E	E	T	F	L	Y	H	G
Query Conservation
Alig confidence
Template Conservation
Template Sequence		N	L	T	N	L	V	H	V	D	L	S	Y	N
Template Known Secondary structure		T		T	T							T	T	S
Template Predicted Secondary structure
Template SS confidence
		172	.	.	.	.	.	.	.	180	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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