Job Description P76321 Confidence 99.16% Date Thu Jan 5 12:21:47 GMT 2012 Rank 44 Aligned Residues 143 % Identity 21% Template c2z62A_ PDB info PDB header:immune system Chain: A: PDB Molecule:toll-like receptor 4, variable lymphocyte receptor b; PDBTitle: crystal structure of the tv3 hybrid of human tlr4 and hagfish vlrb.61 Resolution 1.70 Å

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		18	.	20	.	.	.	.	.	.	.	.	.	30	.		.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.						.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.					70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.
Predicted Secondary structure																.																						.	.	.	.	.																		.	.	.	.																		.
Query SS confidence																.																						.	.	.	.	.																		.	.	.	.																		.
Query Sequence		K	L	D	L	T	D	L	H	L	G	S	L	P	P	.	L	P	S	W	I	E	V	L	Y	L	R	H	N	G	L	A	T	I	Q	I	P	.	.	.	.	.	K	F	C	K	E	L	E	L	D	F	N	N	Y	M	V	F	P	.	.	.	.	K	V	S	D	G	I	T	Q	V	S	V	D	N	N	L	I	S	.
Query Conservation																.																						.	.	.	.	.																		.	.	.	.																		.
Alig confidence																.																						.	.	.	.	.																		.	.	.	.																		.
Template Conservation
Template Sequence		T	Y	Q	C	M	E	L	N	F	Y	K	I	P	D	N	L	P	F	S	T	K	N	L	D	L	S	F	N	P	L	R	H	L	G	S	Y	S	F	F	S	F	P	E	L	Q	V	L	D	L	S	R	C	E	I	Q	T	I	E	D	G	A	Y	Q	S	L	S	H	L	S	T	L	I	L	T	G	N	P	I	Q	S
Template Known Secondary structure						T	T	S			S	S			S	S	S		T	T							T	T								T	T	T	T	T	T		T	T		S					T	T								T	T	T	T	T	T		T	T							T	T
Template Predicted Secondary structure
Template SS confidence
		37	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		L	A	L	G	A	F	S	G	L	S	S	L	Q	K	L	V	A	V	E	T	N	L	A	S	L	E	N	F	P	I	G	H	L	K	T	L	K	E	L	N	V	A	H	N	L	I	Q	S	F	K	L	P	E	Y	F	S	N	L	T	N	L	E	H	L	D	L	S	S	N	K	I	Q	S	I	Y	C	T	D	L	R
Template Known Secondary structure				T	T	T	T	T	T		T	T							T	T	S					S	T	T				T	T		T	T								S	S									G	G	G	G	G		T	T								S	S							G	G	G	G
Template Predicted Secondary structure
Template SS confidence
		117	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.
		87	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.				.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.
Predicted Secondary structure																											.	.	.
Query SS confidence																											.	.	.
Query Sequence		R	V	D	S	S	P	S	K	A	M	T	I	S	I	Y	R	N	K	I	W	X	I	P	A	M	.	.	.	P	E	T	T	K	L	F	N	C	G	D	N	K	I	K	E	I	Q	Y	F	P	N	H	L	E	K	A	R	M	E	C	D	I	E	V	V	S	A	I	Y	S	N	K	E	L	L	F	K	E	C	N	S
Query Conservation																											.	.	.
Alig confidence																											.	.	.																					.	.	.	.	.	.	.	.
Template Conservation																																																		.	.	.	.	.	.	.	.
Template Sequence		V	L	H	Q	M	P	L	L	N	L	S	L	D	L	S	L	N	P	M	N	F	I	Q	P	G	A	F	K	E	I	R	L	K	E	L	A	L	D	T	N	Q	L	K	S	V	P	D	G	.	.	.	.	.	.	.	.	I	F	D	R	L	T	S	L	Q	K	I	W	L	H	T	N	P	W	D	C	S	C	P	R
Template Known Secondary structure					T		T	T									S	S							T	T	S	S		S										S	S			S				T	T	.	.	.	.	.	.	.	.	T	T	T	T			S								S	S		B				T	T	T
Template Predicted Secondary structure																																																		.	.	.	.	.	.	.	.
Template SS confidence
		197	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.									.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.
		164	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		F	E	E	T	F
Query Conservation
Alig confidence
Template Conservation
Template Sequence		I	D	Y	L	S
Template Known Secondary structure		T
Template Predicted Secondary structure
Template SS confidence
		269	270	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions