Job Description P76321 Confidence 98.89% Date Thu Jan 5 12:21:47 GMT 2012 Rank 53 Aligned Residues 115 % Identity 25% Template c2y5qA_ PDB info PDB header:protein binding Chain: A: PDB Molecule:internalin b; PDBTitle: listeria monocytogenes inlb (internalin b) residues 36-392 Resolution 3.20 Å

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		15	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.			.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.
Predicted Secondary structure																				.	.																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																				.	.																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		H	N	S	K	L	D	L	T	D	L	H	L	G	S	L	P	P	L	.	.	P	S	W	I	E	V	L	Y	L	R	H	N	G	L	A	T	I	Q	I	P	K	F	C	K	E	L	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation																				.	.																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																				.	.																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		S	I	D	Q	I	I	A	N	N	S	D	I	K	S	V	Q	G	I	Q	Y	L	P	N	V	T	K	L	F	L	N	G	N	K	L	T	D	I	K	P	L	A	N	L	K	N	L	G	W	L	F	L	D	E	N	K	V	K	D	L	S	S	L	K	D	L	K	K	L	K	S	L	S	L	E	H	N	G	I	S	D
Template Known Secondary structure		T							T	T	S			S			T	T	G	G	G		T	T							T	T	S						G	G	G	T	T		T	T							T	T	S					G	G	G	G	G	G		T	T							T	T	S
Template Predicted Secondary structure
Template SS confidence
		77	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.
																	59	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.			.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.			.	.	.	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																			.	.																				.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																			.	.																				.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	E	L	D	F	N	N	Y	M	V	F	P	K	V	S	D	G	I	T	Q	V	S	V	D	N	N	L	I	S	R	V	D	S	S	P	.	.	S	K	A	M	T	I	S	I	Y	R	N	K	I	W	X	I	P	A	M	.	.	P	E	T	T	K	L	F	N
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																			.	.																				.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																			.	.																				.	.
Template Conservation
Template Sequence		I	N	G	L	V	H	L	P	Q	L	E	S	L	Y	L	G	N	N	K	I	T	D	I	T	V	L	S	R	L	T	K	L	D	T	L	S	L	E	D	N	Q	I	S	D	I	V	P	L	A	G	L	T	K	L	Q	N	L	Y	L	S	K	N	H	I	S	D	L	R	A	L	A	G	L	K	N	L	D	V	L	E
Template Known Secondary structure			G	G	G	G	G		T	T		S						S	S						G	G	G	G	G		T	T		S						S	S			S			G	G	G	T	T		T	T								S	S				B		G	G	G	T	T		T	T		S
Template Predicted Secondary structure
Template SS confidence
		157	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.
		120	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		C	G	D	N	K	I	K	E	I	Q
Query Conservation
Alig confidence
Template Conservation
Template Sequence		L	F	S	Q	E	C	L	N	K	P
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		237	.	.	240	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions