Job Description P76321 Confidence 99.54% Date Thu Jan 5 12:21:47 GMT 2012 Rank 22 Aligned Residues 149 % Identity 18% Template c2xotA_ PDB info PDB header:cell adhesion Chain: A: PDB Molecule:amphoterin-induced protein 1; PDBTitle: crystal structure of neuronal leucine rich repeat protein amigo-1 Resolution 2.00 Å

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		15	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.		.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.							.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.					70	.	.	.	.	.	.	.	.	.	80	.	.	.
Predicted Secondary structure																			.																						.	.	.	.	.	.																		.	.	.	.
Query SS confidence																			.																						.	.	.	.	.	.																		.	.	.	.
Query Sequence		H	N	S	K	L	D	L	T	D	L	H	L	G	S	L	P	P	.	L	P	S	W	I	E	V	L	Y	L	R	H	N	G	L	A	T	I	Q	I	P	.	.	.	.	.	.	K	F	C	K	E	L	E	L	D	F	N	N	Y	M	V	F	P	.	.	.	.	K	V	S	D	G	I	T	Q	V	S	V	D	N	N
Query Conservation																			.																						.	.	.	.	.	.																		.	.	.	.
Alig confidence																			.																						.	.	.	.	.	.																		.	.	.	.
Template Conservation
Template Sequence		A	S	N	I	L	S	C	S	K	Q	Q	L	P	N	V	P	Q	S	L	P	S	Y	T	A	L	L	D	L	S	H	N	N	L	S	R	L	R	A	E	W	T	P	T	R	L	T	N	L	H	S	L	L	L	S	H	N	H	L	N	F	I	S	S	E	A	F	V	P	V	P	N	L	R	Y	L	D	L	S	S	N
Template Known Secondary structure			T	T						S	S			S	S			S	S			T	T		S						S	S							T	T	S	S	S	S			T	T								S	S							T	T	T	T	T	T		T	T								S	S
Template Predicted Secondary structure
Template SS confidence
		41	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
		84	.	.	.	.	.					90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.					.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.
Predicted Secondary structure								.	.	.	.																							.	.	.	.
Query SS confidence								.	.	.	.																							.	.	.	.
Query Sequence		L	I	S	R	V	D	.	.	.	.	S	S	P	S	K	A	M	T	I	S	I	Y	R	N	K	I	W	X	I	P	A	M	.	.	.	.	P	E	T	T	K	L	F	N	C	G	D	N	K	I	K	E	I	Q	Y	F	P	N	H	L	E	K	A	R	M	E	C	D	I	E	V	V	S	A	I	Y	S	N	K	E
Query Conservation								.	.	.	.																							.	.	.	.
Alig confidence								.	.	.	.																							.	.	.	.																				.	.	.	.	.	.	.	.	.
Template Conservation																																																									.	.	.	.	.	.	.	.	.
Template Sequence		H	L	H	T	L	D	E	F	L	F	S	D	L	Q	A	L	E	V	L	L	L	Y	N	N	H	I	V	V	V	D	R	N	A	F	E	D	M	A	Q	L	Q	K	L	Y	L	S	Q	N	Q	I	S	R	F	P	V	.	.	.	.	.	.	.	.	.	E	L	I	K	L	P	K	L	M	L	L	D	L	S	S	N
Template Known Secondary structure								T	T	T	T	T	T		T	T								S	S							T	T	T	T	T	T		T	T								S	S				S			G	.	.	.	.	.	.	.	.	.	G	G	T			T	T								S	S
Template Predicted Secondary structure																																																									.	.	.	.	.	.	.	.	.
Template SS confidence
		121	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.										.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.
		156	.								.	.	160	.	.	.			.	.	.	.	.	.	170	.	.
Predicted Secondary structure				.	.	.	.	.	.	.							.	.
Query SS confidence				.	.	.	.	.	.	.							.	.
Query Sequence		L	L	.	.	.	.	.	.	.	F	K	E	C	N	S	.	.	F	E	E	T	F	L	Y	H	G
Query Conservation				.	.	.	.	.	.	.							.	.
Alig confidence				.	.	.	.	.	.	.							.	.
Template Conservation
Template Sequence		K	L	K	K	L	P	L	T	D	L	Q	K	L	P	A	W	V	K	N	G	L	Y	L	H	N	N
Template Known Secondary structure														S						T	T					S	S
Template Predicted Secondary structure
Template SS confidence
		196	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions