Job Description P76321 Confidence 99.52% Date Thu Jan 5 12:21:47 GMT 2012 Rank 25 Aligned Residues 111 % Identity 15% Template c2r9uC_ PDB info PDB header:immune system Chain: C: PDB Molecule:variable lymphocyte receptor; PDBTitle: crystal structure of lamprey variable lymphocyte receptor 29132 ectodomain Resolution 2.10 Å

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		15	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.		.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.						.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.					70	.	.	.	.	.	.	.	.	.	80	.	.	.	.
Predicted Secondary structure																			.																						.	.	.	.	.																		.	.	.	.
Query SS confidence																			.																						.	.	.	.	.																		.	.	.	.
Query Sequence		H	N	S	K	L	D	L	T	D	L	H	L	G	S	L	P	P	.	L	P	S	W	I	E	V	L	Y	L	R	H	N	G	L	A	T	I	Q	I	P	.	.	.	.	.	K	F	C	K	E	L	E	L	D	F	N	N	Y	M	V	F	P	.	.	.	.	K	V	S	D	G	I	T	Q	V	S	V	D	N	N	L
Query Conservation																			.																						.	.	.	.	.																		.	.	.	.
Alig confidence																			.																						.	.	.	.	.																		.	.	.	.
Template Conservation
Template Sequence		D	Q	T	L	V	N	C	Q	N	I	R	L	A	S	V	P	A	G	I	P	T	D	K	Q	R	L	W	L	N	N	N	Q	I	T	K	L	E	P	G	V	F	D	H	L	V	N	L	Q	Q	L	Y	F	N	S	N	K	L	T	A	I	P	T	G	V	F	D	K	L	T	Q	L	T	Q	L	D	L	N	D	N	H
Template Known Secondary structure			S	S						S	S			S	S			S				T	T		S						S	S							T	T	T	T	T	T		T	T								S	S							T	T	T	T	T	T		T	T								S	S
Template Predicted Secondary structure
Template SS confidence
		29	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.
		85	.	.	.	.	90	.	.					.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.
Predicted Secondary structure										.	.	.	.
Query SS confidence										.	.	.	.
Query Sequence		I	S	R	V	D	S	S	P	.	.	.	.	S	K	A	M	T	I	S	I	Y	R	N	K	I	W	X	I	P	A	M	P	E	T	T	K	L	F	N	C	G	D	N	K	I
Query Conservation										.	.	.	.
Alig confidence										.	.	.	.
Template Conservation
Template Sequence		L	K	S	I	P	R	G	A	F	D	N	L	K	S	L	T	H	I	Y	L	Y	N	N	P	W	D	C	E	C	R	D	I	M	Y	L	R	N	W	V	A	D	H	T	S	I
Template Known Secondary structure							T	T	T	T	T	T		T	T		S						S	S		B		T	T	B	G	G	G											G	G	G
Template Predicted Secondary structure
Template SS confidence
		109	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions