Job Description P76321 Confidence 99.57% Date Thu Jan 5 12:21:47 GMT 2012 Rank 18 Aligned Residues 145 % Identity 14% Template c2o6sA_ PDB info PDB header:immune system Chain: A: PDB Molecule:variable lymphocyte receptor b; PDBTitle: structural diversity of the hagfish variable lymphocyte2 receptors b59 Resolution 1.50 Å

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		16	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.		.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50						.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.					70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.
Predicted Secondary structure																		.																				.	.	.	.	.																				.	.	.	.
Query SS confidence																		.																				.	.	.	.	.																				.	.	.	.
Query Sequence		N	S	K	L	D	L	T	D	L	H	L	G	S	L	P	P	.	L	P	S	W	I	E	V	L	Y	L	R	H	N	G	L	A	T	I	Q	.	.	.	.	.	I	P	K	F	C	K	E	L	E	L	D	F	N	N	Y	M	V	F	P	.	.	.	.	K	V	S	D	G	I	T	Q	V	S	V	D	N	N	L	I
Query Conservation																		.																				.	.	.	.	.																				.	.	.	.
Alig confidence																		.																				.	.	.	.	.																				.	.	.	.
Template Conservation
Template Sequence		G	T	T	V	E	C	Y	S	Q	G	R	T	S	V	P	T	G	I	P	A	Q	T	T	Y	L	D	L	E	T	N	S	L	K	S	L	P	N	G	V	F	D	E	L	T	S	L	T	Q	L	Y	L	G	G	N	K	L	Q	S	L	P	N	G	V	F	N	K	L	T	S	L	T	Y	L	N	L	S	T	N	Q	L
Template Known Secondary structure		T	T						S	S			S	S			S				T	T		S						S	S							T	T	T	T	T	T		T	T		S						S	S							T	T	T	T	T	T		T	T								S	S
Template Predicted Secondary structure
Template SS confidence
		32	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.
		86	.	.	.	90	.	.					.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.					.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.
Predicted Secondary structure									.	.	.	.																					.	.	.	.
Query SS confidence									.	.	.	.																					.	.	.	.
Query Sequence		S	R	V	D	S	S	P	.	.	.	.	S	K	A	M	T	I	S	I	Y	R	N	K	I	W	X	I	P	A	M	P	.	.	.	.	E	T	T	K	L	F	N	C	G	D	N	K	I	K	E	I	Q	Y	F	P	N	H	L	E	K	A	R	M	E	C	D	I	E	V	V	S	A	I	Y	S	N	K	E	L	L
Query Conservation									.	.	.	.																					.	.	.	.
Alig confidence									.	.	.	.																					.	.	.	.																				.	.	.	.	.	.	.	.
Template Conservation																																																								.	.	.	.	.	.	.	.
Template Sequence		Q	S	L	P	N	G	V	F	D	K	L	T	Q	L	K	E	L	A	L	N	T	N	Q	L	Q	S	L	P	D	G	V	F	D	K	L	T	Q	L	K	D	L	R	L	Y	Q	N	Q	L	K	S	V	P	D	G	.	.	.	.	.	.	.	.	V	F	D	R	L	T	S	L	Q	Y	I	W	L	H	D	N	P	W
Template Known Secondary structure						T	T	T	T	T	T		T	T								S	S							T	T	T	T	T	T		T	T								S	S			S				T	T	.	.	.	.	.	.	.	.	T	T	T	T		T	T								S			B
Template Predicted Secondary structure																																																								.	.	.	.	.	.	.	.
Template SS confidence
		112	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.									.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.
		158	.	160	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		F	K	E	C	N	S	F	E	E	T	F
Query Conservation
Alig confidence
Template Conservation
Template Sequence		D	C	T	C	P	G	I	R	Y	L	S
Template Known Secondary structure					T	T	T	T
Template Predicted Secondary structure
Template SS confidence
		184	.	.	.	.	.	190	.	.	.	.

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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