Job Description P76321 Confidence 99.37% Date Thu Jan 5 12:21:47 GMT 2012 Rank 34 Aligned Residues 148 % Identity 18% Template c2o6qA_ PDB info PDB header:immune system Chain: A: PDB Molecule:variable lymphocyte receptor a; PDBTitle: structural diversity of the hagfish variable lymphocyte2 receptors a29 Resolution 2.50 Å

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		15	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.		.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.						.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.					.	.	.	.	.	.	.	.	80	.	.	.	.
Predicted Secondary structure																			.																						.	.	.	.	.																				.	.	.	.
Query SS confidence																			.																						.	.	.	.	.																				.	.	.	.
Query Sequence		H	N	S	K	L	D	L	T	D	L	H	L	G	S	L	P	P	.	L	P	S	W	I	E	V	L	Y	L	R	H	N	G	L	A	T	I	Q	I	P	.	.	.	.	.	K	F	C	K	E	L	E	L	D	F	N	N	Y	M	V	F	P	K	V	.	.	.	.	S	D	G	I	T	Q	V	S	V	D	N	N	L
Query Conservation																			.																						.	.	.	.	.																				.	.	.	.
Alig confidence																			.																						.	.	.	.	.																				.	.	.	.
Template Conservation
Template Sequence		N	K	N	S	V	D	C	S	S	K	K	L	T	A	I	P	S	N	I	P	A	D	T	K	K	L	D	L	Q	S	N	K	L	S	S	L	P	S	K	A	F	H	R	L	T	K	L	R	L	L	Y	L	N	D	N	K	L	Q	T	L	P	A	G	I	F	K	E	L	K	N	L	E	T	L	W	V	T	D	N	K
Template Known Secondary structure		T	T	T					T	T	S			S	S			S				T	T		S						S	S			S				T	T	S	S	S	S		T	T								S	S			S				T	T	T	T	S	S		T	T								S	S
Template Predicted Secondary structure
Template SS confidence
		39	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.
		85	.	.	.	.	90																																																					.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.
Predicted Secondary structure								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		I	S	R	V	D	S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S	P	S	K	A	M	T	I	S	I	Y	R	N	K	I	W	X	I	P	A	M	P
Query Conservation								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		L	Q	A	L	P	I	G	V	F	D	Q	L	V	N	L	A	E	L	R	L	D	R	N	Q	L	K	S	L	P	P	R	V	F	D	S	L	T	K	L	T	Y	L	S	L	G	Y	N	E	L	Q	S	L	P	K	G	V	F	D	K	L	T	S	L	K	E	L	R	L	Y	N	N	Q	L	K	R	V	P	E	G	A
Template Known Secondary structure							T	T	T	T	T	T		S	S								S	S							T	T	T	T	T	T		T	T								S	S							T	T	T	T	T	T		T	T								S	S			S				T	T	T
Template Predicted Secondary structure
Template SS confidence
		119	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.
						113	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170
Predicted Secondary structure		.	.	.	.
Query SS confidence		.	.	.	.
Query Sequence		.	.	.	.	E	T	T	K	L	F	N	C	G	D	N	K	I	K	E	I	Q	Y	F	P	N	H	L	E	K	A	R	M	E	C	D	I	E	V	V	S	A	I	Y	S	N	K	E	L	L	F	K	E	C	N	S	F	E	E	T	F	L	Y
Query Conservation		.	.	.	.
Alig confidence		.	.	.	.																				.	.	.	.	.	.	.	.
Template Conservation																									.	.	.	.	.	.	.	.
Template Sequence		F	D	K	L	T	E	L	K	T	L	K	L	D	N	N	Q	L	K	R	V	P	E	G	.	.	.	.	.	.	.	.	A	F	D	S	L	E	K	L	K	M	L	Q	L	Q	E	N	P	W	D	C	T	C	N	G	I	I	Y	M	A	K	W
Template Known Secondary structure		T	T	T		T	T								S	S			S				T	T	.	.	.	.	.	.	.	.	T	T	T	T		T	T								S	S		B			S	S	S	S	S
Template Predicted Secondary structure																									.	.	.	.	.	.	.	.
Template SS confidence
		199	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.									.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions