Job Description P76321 Confidence 99.30% Date Thu Jan 5 12:21:47 GMT 2012 Rank 37 Aligned Residues 118 % Identity 17% Template c2id5D_ PDB info PDB header:ligand binding protein,membrane protein Chain: D: PDB Molecule:leucine rich repeat neuronal 6a; PDBTitle: crystal structure of the lingo-1 ectodomain Resolution 2.70 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		15	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.
Predicted Secondary structure																																																																																.	.
Query SS confidence																																																																																.	.
Query Sequence		H	N	S	K	L	D	L	T	D	L	H	L	G	S	L	P	P	L	P	S	W	I	E	V	L	Y	L	R	H	N	G	L	A	T	I	Q	I	P	K	F	C	K	E	L	E	L	D	F	N	N	Y	M	V	F	P	K	V	S	D	G	I	T	Q	V	S	V	D	N	N	L	I	S	R	V	D	S	S	P	.	.
Query Conservation																																																																																.	.
Alig confidence																						.	.															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																												.	.
Template Conservation																						.	.															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		Q	D	R	A	V	L	C	H	R	K	R	F	V	A	V	P	E	G	I	P	.	.	R	L	L	D	L	G	K	N	R	I	K	T	L	N	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	Q	D	E	F	A	S	F	P	H	L	E	E	L	E	L	N	E	N	I	V	S	A	V	E	P	G	A	F	N
Template Known Secondary structure		T	T	T						S	S			S	S			S	S			.	.							S								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T	T	T	T	T	T					S					T	T								S	S		S	T
Template Predicted Secondary structure																						.	.															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		12	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.			.	.	.	.	.	.	.	.	40	.	.	.	.	.																.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.
				93	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.					.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.
Predicted Secondary structure		.	.																					.	.	.	.
Query SS confidence		.	.																					.	.	.	.
Query Sequence		.	.	S	K	A	M	T	I	S	I	Y	R	N	K	I	W	X	I	P	A	M	P	.	.	.	.	E	T	T	K	L	F	N	C	G	D	N	K	I	K	E	I	Q	Y	F	P	N	H	L	E	K	A	R	M	E	C	D	I	E	V	V	S	A	I	Y	S	N	K	E	L	L
Query Conservation		.	.																					.	.	.	.
Alig confidence		.	.																					.	.	.	.																				.	.	.	.	.	.	.	.
Template Conservation																																															.	.	.	.	.	.	.	.
Template Sequence		N	L	F	N	L	R	T	L	G	L	R	S	N	R	L	K	L	I	P	L	G	V	F	T	G	L	S	N	L	T	K	L	D	I	S	E	N	K	I	V	I	L	L	D	Y	.	.	.	.	.	.	.	.	M	F	Q	D	L	Y	N	L	K	S	L	E	V	G	D	N	D	L
Template Known Secondary structure		T		T	T							T	T	S			S				T	T	T	T	T	T		T	T								S	S							T	T	.	.	.	.	.	.	.	.	T	T	T	T		T	T									T	T
Template Predicted Secondary structure																																															.	.	.	.	.	.	.	.
Template SS confidence
		78	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.									.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions