Job Description P76321 Confidence 99.57% Date Thu Jan 5 12:21:47 GMT 2012 Rank 17 Aligned Residues 153 % Identity 19% Template c2ft3B_ PDB info PDB header:structural protein, signaling protein Chain: B: PDB Molecule:biglycan; PDBTitle: crystal structure of the biglycan dimer core protein Resolution 3.40 Å

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		15	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.		.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.						.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.					.	.	.	.	.	.	.	.	80	.	.	.	.
Predicted Secondary structure																			.																						.	.	.	.	.																				.	.	.	.
Query SS confidence																			.																						.	.	.	.	.																				.	.	.	.
Query Sequence		H	N	S	K	L	D	L	T	D	L	H	L	G	S	L	P	P	.	L	P	S	W	I	E	V	L	Y	L	R	H	N	G	L	A	T	I	Q	I	P	.	.	.	.	.	K	F	C	K	E	L	E	L	D	F	N	N	Y	M	V	F	P	K	V	.	.	.	.	S	D	G	I	T	Q	V	S	V	D	N	N	L
Query Conservation																			.																						.	.	.	.	.																				.	.	.	.
Alig confidence																			.																						.	.	.	.	.																				.	.	.	.
Template Conservation
Template Sequence		H	L	R	V	V	Q	C	S	D	L	G	L	K	A	V	P	K	E	I	S	P	D	T	T	L	L	D	L	Q	N	N	D	I	S	E	L	R	K	D	D	F	K	G	L	Q	H	L	Y	A	L	V	L	V	N	N	K	I	S	K	I	H	E	K	A	F	S	P	L	R	K	L	Q	K	L	Y	I	S	K	N	H
Template Known Secondary structure			T	T						S	S			S	S	S		S				T	T								S	S							T	T	T	T	T	T		T	T								S	S							G	G	G	S	T	T		T	T								S	S
Template Predicted Secondary structure
Template SS confidence
		34	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.
		85	.
Predicted Secondary structure				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		I	S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		L	V	E	I	P	P	N	L	P	S	S	L	V	E	L	R	I	H	D	N	R	I	R	K	V	P	K	G	V	F	S	G	L	R	N	M	N	C	I	E	M	G	G	N	P	L	E	N	S	G	F	E	P	G	A	F	D	G	L	K	L	N	Y	L	R	I	S	E	A	K	L	T	G	I	P	K	D	L	P	E
Template Known Secondary structure				S			S	S			T	T								S								S	T	T	S	S	S		S	S								S	S				G	G	G	S		T	T	S	S		S				S			B			S	S			S	S			S	S	S		T
Template Predicted Secondary structure
Template SS confidence
		114	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.
																																											87	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.				.	.	.	.	.	.	.	120	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																											.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																											.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	R	V	D	S	S	P	S	K	A	M	T	I	S	I	Y	R	N	K	I	W	X	I	P	A	M	P	.	.	.	E	T	T	K	L	F	N	C	G	D
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																											.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																											.	.	.
Template Conservation
Template Sequence		T	L	N	E	L	H	L	D	H	N	K	I	Q	A	I	E	L	E	D	L	L	R	Y	S	K	L	Y	R	L	G	L	G	H	N	Q	I	R	M	I	E	N	G	S	L	S	F	L	P	T	L	R	E	L	H	L	D	N	N	K	L	S	R	V	P	A	G	L	P	D	L	K	L	L	Q	V	V	Y	L	H	T
Template Known Secondary structure		T		S			B			S	S							T	T	T	T	T	T		T	T		S						S	S							T	T	G	G	G	S		T	T								S	S				B			T	T	G	G	G		T	T							T	T
Template Predicted Secondary structure
Template SS confidence
		194	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.
		123	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.										.	.	160	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																					.	.	.	.	.	.	.	.	.
Query SS confidence																																					.	.	.	.	.	.	.	.	.
Query Sequence		N	K	I	K	E	I	Q	Y	F	P	N	H	L	E	K	A	R	M	E	C	D	I	E	V	V	S	A	I	Y	S	N	K	E	L	L	.	.	.	.	.	.	.	.	.	F	K	E	C	N	S	F	E	E	T	F	L
Query Conservation																																					.	.	.	.	.	.	.	.	.
Alig confidence										.	.																										.	.	.	.	.	.	.	.	.
Template Conservation										.	.
Template Sequence		N	N	I	T	K	V	G	V	.	.	N	D	F	C	P	V	G	F	G	V	K	R	A	Y	Y	N	G	I	S	L	F	N	N	P	V	P	Y	W	E	V	Q	P	A	T	F	R	C	V	T	D	R	L	A	I	Q	F
Template Known Secondary structure		S				B			T	.	.	T	S	S	S		T	T			S	S					S						S	S	S	S		G	G	G	S		G	G	G	G	S	S			S	S	T	T
Template Predicted Secondary structure										.	.
Template SS confidence
		274	.	.	.	.	.	280	.			.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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