Job Description P76321 Confidence 99.66% Date Thu Jan 5 12:21:47 GMT 2012 Rank 8 Aligned Residues 134 % Identity 18% Template c2a0zA_ PDB info PDB header:immune system Chain: A: PDB Molecule:toll-like receptor 3; PDBTitle: the molecular structure of toll-like receptor 3 ligand binding domain Resolution 2.40 Å

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		16	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.		.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.						.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.					.	.	.	.	.	.	.	.	80	.	.	.	.	.
Predicted Secondary structure																		.																						.	.	.	.	.																				.	.	.	.
Query SS confidence																		.																						.	.	.	.	.																				.	.	.	.
Query Sequence		N	S	K	L	D	L	T	D	L	H	L	G	S	L	P	P	.	L	P	S	W	I	E	V	L	Y	L	R	H	N	G	L	A	T	I	Q	I	P	.	.	.	.	.	K	F	C	K	E	L	E	L	D	F	N	N	Y	M	V	F	P	K	V	.	.	.	.	S	D	G	I	T	Q	V	S	V	D	N	N	L	I
Query Conservation																		.																						.	.	.	.	.																				.	.	.	.
Alig confidence																		.																						.	.	.	.	.																				.	.	.	.
Template Conservation
Template Sequence		H	E	V	A	D	C	S	H	L	K	L	T	Q	V	P	D	D	L	P	T	N	I	T	V	L	N	L	T	H	N	Q	L	R	R	L	P	A	A	N	F	T	R	Y	S	Q	L	T	S	L	D	V	G	F	N	T	I	S	K	L	E	P	E	L	C	Q	K	L	P	M	L	K	V	L	N	L	Q	H	N	E	L
Template Known Secondary structure		T	T						S	S			S	S			S	S	S		T	T		S						S	S							G	G	G	G	T	T		T	T		S						S	S							T	T						T	T								S	S
Template Predicted Secondary structure
Template SS confidence
		32	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.
		86	.	.	.	90	.	.					.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.					.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.
Predicted Secondary structure									.	.	.	.																					.	.	.	.
Query SS confidence									.	.	.	.																					.	.	.	.
Query Sequence		S	R	V	D	S	S	P	.	.	.	.	S	K	A	M	T	I	S	I	Y	R	N	K	I	W	X	I	P	A	M	P	.	.	.	.	E	T	T	K	L	F	N	C	G	D	N	K	I	K	E	I	Q	Y	F	P	N	H	L	E	K	A	R	M	E	C	D	I	E	V	V	S	A	I	Y	S	N	K	E	L	L
Query Conservation									.	.	.	.																					.	.	.	.
Alig confidence									.	.	.	.																					.	.	.	.																				.	.	.	.	.	.	.	.
Template Conservation																																																								.	.	.	.	.	.	.	.
Template Sequence		S	Q	L	S	D	K	T	F	A	F	C	T	N	L	T	E	L	H	L	M	S	N	S	I	Q	K	I	K	N	N	P	F	V	K	Q	K	N	L	I	T	L	D	L	S	H	N	G	L	S	S	T	K	L	G	.	.	.	.	.	.	.	.	T	Q	V	Q	L	E	N	L	Q	E	L	L	L	S	N	N	K	I
Template Known Secondary structure						T	T	T	T	T	T		T	T		S					T	T	S							S		T	T	T	T		T	T								S	S									.	.	.	.	.	.	.	.	S	S	S			T	T								S	S
Template Predicted Secondary structure																																																								.	.	.	.	.	.	.	.
Template SS confidence
		112	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.									.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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