Job Description P76321 Confidence 98.09% Date Thu Jan 5 12:21:47 GMT 2012 Rank 65 Aligned Residues 133 % Identity 9% Template c1kooD_ PDB info PDB header:rna binding protein Chain: D: PDB Molecule:tip associating protein; PDBTitle: the crystal structure and mutational analysis of a novel2 rna-binding domain found in the human tap nuclear mrna3 export factor Resolution 3.80 Å

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		2	.	.	.	.	.	.	.	10	.	.	.	.	.					.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.
Predicted Secondary structure																.	.	.	.
Query SS confidence																.	.	.	.
Query Sequence		D	I	A	L	V	R	L	F	K	C	V	E	L	H	.	.	.	.	N	S	K	L	D	L	T	D	L	H	L	G	S	L	P	P	L	P	S	W	I	E	V	L	Y	L	R	H	N	G	L	A	T	I	Q	I	P	K	F	C	K	E	L	E	L	D	F	N	N	Y	M	V	F	P	K	V	S	D	G	I	T	Q
Query Conservation																.	.	.	.
Alig confidence																.	.	.	.											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		P	E	Q	V	E	Q	L	K	L	I	M	S	K	R	Y	D	G	S	Q	Q	A	L	D	L	K	G	L	R	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S	D	P	D	L	V	A	Q	N	I	D	V	V	L	N	R	R	S	S	M	A	A	T	L	R	I	I	E	E	N	I	P	E	L	L	S
Template Known Secondary structure																		T	T	T	T					T	T	T	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.		S	S		S		S							T	T	S																T	T
Template Predicted Secondary structure																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		206	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.																	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.
		78	.	80	.	.	.	.	.	.	.	.							.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.					.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.
Predicted Secondary structure													.	.	.	.	.	.																									.	.	.	.
Query SS confidence													.	.	.	.	.	.																									.	.	.	.
Query Sequence		V	S	V	D	N	N	L	I	S	R	V	.	.	.	.	.	.	D	S	S	P	S	K	A	M	T	I	S	I	Y	R	N	K	I	W	X	I	P	A	M	P	.	.	.	.	E	T	T	K	L	F	N	C	G	D	N	K	I	K	E	I	Q	Y	F	P	N	H	L	E	K	A	R	M	E	C	D	I	E	V	V
Query Conservation													.	.	.	.	.	.																									.	.	.	.
Alig confidence													.	.	.	.	.	.																									.	.	.	.																								.
Template Conservation																																																																						.
Template Sequence		L	N	L	S	N	N	R	L	Y	R	L	D	D	M	S	S	I	V	Q	K	A	P	N	L	K	I	L	N	L	S	G	N	E	L	K	S	E	R	E	L	D	K	I	K	G	L	K	L	E	E	L	W	L	D	G	N	S	L	C	D	T	F	R	D	Q	S	T	Y	.	I	S	A	I	R	E	R	F	P	K	L
Template Known Secondary structure						S	S						G	G	G	G	G	G	T	T	T		S									S	S					T	T	G	G	G	G	G			S			S						S	S	T	T	T	T	S		S	S	T	T			.			T						T	T
Template Predicted Secondary structure																																																																						.
Template SS confidence
		270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.		.	.	340	.	.	.	.	.	.	.	.
		148	.	150	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	A	I	Y
Query Conservation
Alig confidence
Template Conservation
Template Sequence		L	R	L	D
Template Known Secondary structure					S
Template Predicted Secondary structure
Template SS confidence
		349	350	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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