Job Description P76321 Confidence 99.87% Date Thu Jan 5 12:21:47 GMT 2012 Rank 4 Aligned Residues 154 % Identity 34% Template c1g9uA_ PDB info PDB header:toxin Chain: A: PDB Molecule:outer protein yopm; PDBTitle: crystal structure of yopm-leucine rich effector protein from yersinia2 pestis Resolution 2.35 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50		.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80
Predicted Secondary structure																																																			.
Query SS confidence																																																			.
Query Sequence		D	I	A	L	V	R	L	F	K	C	V	E	L	H	N	S	K	L	D	L	T	D	L	H	L	G	S	L	P	P	L	P	S	W	I	E	V	L	Y	L	R	H	N	G	L	A	T	I	Q	.	I	P	K	F	C	K	E	L	E	L	D	F	N	N	Y	M	V	F	P	K	V	S	D	G	I	T	Q	V	S	V
Query Conservation																																																			.
Alig confidence																																																			.
Template Conservation
Template Sequence		E	M	A	V	S	R	L	R	D	C	L	D	R	Q	A	H	E	L	E	L	N	N	L	G	L	S	S	L	P	E	L	P	P	H	L	E	S	L	V	A	S	C	N	S	L	T	E	L	P	E	L	P	Q	S	L	K	S	L	L	V	D	N	N	N	L	K	A	L	S	D	L	P	P	L	L	E	Y	L	G	V
Template Known Secondary structure															T		S					T	T	S			S							T	T								S	S			S	S						T	T								S	S			S	B						T	T
Template Predicted Secondary structure
Template SS confidence
		59	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.
		81	.	.	.	.	.
Predicted Secondary structure								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		D	N	N	L	I	S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		S	N	N	Q	L	E	K	L	P	E	L	Q	N	S	S	F	L	K	I	I	D	V	D	N	N	S	L	K	K	L	P	D	L	P	P	S	L	E	F	I	A	A	G	N	N	Q	L	E	E	L	P	E	L	Q	N	L	P	F	L	T	A	I	Y	A	D	N	N	S	L	K	K	L	P	D	L	P	L	S	L	E
Template Known Secondary structure			S	S			S	B				G	G	G		T	T								S	S			S							T	T								S	S			S	S					T	T		S	S								S	S			S							T	T
Template Predicted Secondary structure
Template SS confidence
		139	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		S	I	V	A	G	N	N	I	L	E	E	L	P	E	L	Q	N	L	P	F	L	T	T	I	Y	A	D	N	N	L	L	K	T	L	P	D	L	P	P	S	L	E	A	L	N	V	R	D	N	Y	L	T	D	L	P	E	L	P	Q	S	L	T	F	L	D	V	S	E	N	I	F	S	G	L	S	E	L	P	P	N
Template Known Secondary structure							S	S			S						T	T		T	T								S	S			S	S						T	T								S	S			S							T	T								S	S			S							T	T
Template Predicted Secondary structure
Template SS confidence
		219	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.
														87	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	R	V	D	S	S	P	S	K	A	M	T	I	S	I	Y	R	N	K	I	W	X	I	P	A	M	P	E	T	T	K	L	F	N	C	G	D	N	K	I	K	E	I	Q	Y	F	P	N	H	L	E	K	A	R	M	E	C	D	I	E	V	V	S	A	I	Y	S	N	K
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.																																													.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																																										.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		L	Y	Y	L	N	A	S	S	N	E	I	R	S	L	C	D	L	P	P	S	L	E	E	L	N	V	S	N	N	K	L	I	E	L	P	A	L	P	P	R	L	E	R	L	I	A	S	F	N	H	L	A	E	V	P	E	.	.	.	.	.	.	.	.	.	.	.	.	L	P	Q	N	L	K	Q	L	H	V	E	Y
Template Known Secondary structure									S	S										T	T								S	S			S	S						T	T								S	S			S					.	.	.	.	.	.	.	.	.	.	.	.			T	T								S
Template Predicted Secondary structure																																																										.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		299	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.													.	.	.	.	.	360	.	.	.	.	.	.
		155	.	.	.	.	160	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	L	L	F	K	E	C	N	S	F	E	E	T
Query Conservation
Alig confidence
Template Conservation
Template Sequence		N	P	L	R	E	F	P	D	I	P	E	S	V
Template Known Secondary structure		S			S	S						T	T
Template Predicted Secondary structure
Template SS confidence
		367	.	.	370	.	.	.	.	.	.	.	.	.

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions