 |
Job Description | P0AGJ5 | Confidence | 40.24% | Date | Thu Jan 5 11:29:19 GMT 2012 |
Rank | 93 | Aligned Residues | 117 |
% Identity | 11% | Template | c3qjaA_ |
PDB info |
PDB header:lyase | Chain: A: PDB Molecule:indole-3-glycerol phosphate synthase; |
PDBTitle: crystal structure of the mycobacterium tuberculosis indole-3-glycerol2 phosphate synthase (trpc) in apo form
|
Resolution | 1.29 Å |
|
 |
  |   |
108 | . | 110 | . | . | . | . | . | . | . | . | . | 120 | . | . | . | . | . | . | . | . | . | 130 | . | . | . | . | . | . | . | . | . | 140 | . | . | . | . | . | . | . | . | . | 150 | . | . | . | . | . | . | . | |
|
. | . | 160 | . | . | . | . | . | . | . | . | . | 170 | . | . | . | . | . | |
|
|
|
. | . | . | . | 180 | . |
Predicted Secondary structure |   |
 |  |  |  |
|  |  |  |  |  |  |  |  |  |
|
|
|  |  |  |  |  |  |  |  |
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|  |  |  |  |
| . | . |
|  |  |  |  |  |  |  |  |
|
|
|
|
|
|  |  |  | . | . | . | . |  |  |  |
|
|
|
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
. |
. |
|
|
|
|
|
|
Query Sequence |   |
T | R | V | Y | G | E | N | A | C | Q | A | L | F | Q | S | R | P | E | A | I | V | R | A | W | F | I | Q | S | V | T | P | R | F | K | E | A | L | R | W | M | A | A | N | R | K | A | Y | H | V | V | . |
. |
D | E | A | E | L | T | K | A | S | G | T | E | H | H | G | G | V | C | . |
. |
. |
. |
F | L | I | K | K | R |
Query Conservation |   |
  |   |
|
|
|   |   |
|
|   |
|
|
|   |   |   |   |   |   |   |   |   |
|   |   |   |   |   |   |   |   |
|   |   |   |
|
|   |   |
|   |   |   |   |
|   |
|   |   |
| . | . |   |   |   |   |
|   |   |   |
|   |   |   |   |
|
|
|
|
| . | . | . | . |
|   |   |   |   |   |
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . |
|
|
|
|
|
|
Template Conservation |   |
|   |
|   |   |   |   |
|
|   |   |
|   |   |   |
|
|
|   |
|
| . |
|
|   |   |   |
|   |   |   |   |
|   |   |
|   |   |   |
|   |   |
|
|   |   |   |
|
|
|
|   |   |   |   |
|   |   |   |
|   |   |   |
|
|   |   |
|   |
|
|
|   |   |
|   |   |   |   |   |
Template Sequence |   |
D | F | V | V | Q | P | Y | Q | I | H | E | A | R | A | H | G | A | D | M | L | L | . |
L | I | V | A | A | L | E | Q | S | V | L | V | S | M | L | D | R | T | E | S | L | G | M | T | A | L | V | E | V | H | T | E | Q | E | A | D | R | A | L | K | A | G | A | K | V | I | G | V | N | A | R | D | L | M | T | L | D | V |
Template Known Secondary structure |   |
S |
|
|
| S |  |  |  |  |  |  |  |  |  | T | T |
| S |  |  |  | . |  |  | G | G | G | S |
|  |  |  |  |  |  |  |  |  |  |  |  |  | T | T |
|  |  |  |  |  |  | S | S |  |  |  |  |  |  |  |  |  |  | T |
| S |  |  |  |  |  | S | B |
| T | T | T |
|
| B |
Template Predicted Secondary structure |   |
|
|
|
|
|  |  |  |  |  |  |  |  |  |
|
|
|
|
|  |  | . |  |  |  |  |
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |
|
|
|  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |
|
|
|
|
|
|
|
|
|
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
120 | . | . | . | . | . | . | . | . | . | 130 | . | . | . | . | . | . | . | . | . | 140 | |
. | . | . | . | . | . | . | . | . | 150 | . | . | . | . | . | . | . | . | . | 160 | . | . | . | . | . | . | . | . | . | 170 | . | . | . | . | . | . | . | . | . | 180 | . | . | . | . | . | . | . | . | . | 190 | . | . | . | . | . | . | . | . |
  |
  |   |
182 | . | . | . | . | . | . | . | 190 | . | . | . | . | . | . | . | . | . | 200 | . | . | . | . | . | . | . | . | . | 210 | . | . | . | . | . | . | . | . | . | 220 | . | . | . | . | . | . | . | . | . |
Predicted Secondary structure |   |
|
|
|
|  |  |  |  |  |  |  |
|
|
|
|
|  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |
|
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
N | G | T | T | V | Q | Q | W | V | S | Q | A | G | A | Q | D | C | V | L | A | L | E | N | E | S | N | P | H | N | L | G | G | M | M | R | S | C | A | H | F | G | V | K | G | V | V | V | Q |
Query Conservation |   |
  |   |   |   |   |   |   |   |
|   |   |   |   |   |   |   |
|
|
|
|
|
|   |
|   |
|
|   |
|
|
|
|
|
|
|
|
|   |
|
|
|
|   |   |
|
|
|   |
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . |
|
|
|
|
|
|
|
|
Template Conservation |   |
  |   |   |   |   |   |   |
|   |   |   |   |   |   |   |   |   |
|
|
|   |
|
|
|   |
|   |
|
|
|   |   |   |   |   |   | . | . | . | . |
|
|
|
|
|
|
|
|
Template Sequence |   |
D | R | D | C | F | A | R | I | A | P | G | L | P | S | S | V | I | R | I | A | E | S | G | V | R | G | T | A | D | L | L | A | Y | A | G | A | . |
. |
. |
. |
G | A | D | A | V | L | V | G |
Template Known Secondary structure |   |
| T | T |  |  |  |  |  | G | G | G | S |
| T | T | S |  |  |  |  |  | S |
|
|
| S |  |  |  |  |  |  |  |  |  | T | . | . | . | . | T |
| S |  |  |  |  |
|
Template Predicted Secondary structure |   |
 |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|  |  |  |  |  |
|
|
|
|
|  |  |  |  |  |  |  |  |  |
| . | . | . | . |
|
|
|  |  |  |  |
|
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
199 | 200 | . | . | . | . | . | . | . | . | . | 210 | . | . | . | . | . | . | . | . | . | 220 | . | . | . | . | . | . | . | . | . | 230 | . | . | . | . | |
|
|
|
. | . | . | . | . | 240 | . | . |
  |
No model constructed - rank, confidence too low
Phyre is for academic use only
Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
  |
|
|