Job Description P0AGJ5 Confidence 90.27% Date Thu Jan 5 11:29:19 GMT 2012 Rank 47 Aligned Residues 146 % Identity 11% Template c3kw2A_ PDB info PDB header:transferase Chain: A: PDB Molecule:probable r-rna methyltransferase; PDBTitle: crystal structure of probable rrna-methyltransferase from2 porphyromonas gingivalis Resolution 2.00 Å

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		195	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.			.	230	.	.	.	.	.	.	.	.	.	240	.	.										.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.
Predicted Secondary structure																																				.	.															.	.	.	.	.	.	.	.	.
Query SS confidence																																				.	.															.	.	.	.	.	.	.	.	.
Query Sequence		A	Q	D	C	V	L	A	L	E	N	E	S	N	P	H	N	L	G	G	M	M	R	S	C	A	H	F	G	V	K	G	V	V	V	.	.	Q	D	A	A	L	L	E	S	G	A	A	I	R	T	.	.	.	.	.	.	.	.	.	A	E	G	G	A	E	H	V	Q	P	I	T	G	D	N	I	V	N	V	L	D
Query Conservation																																				.	.															.	.	.	.	.	.	.	.	.
Alig confidence																																				.	.															.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		R	D	R	I	T	I	A	I	A	P	T	K	Q	S	E	R	X	E	W	X	L	E	K	L	V	E	I	G	V	D	E	V	V	F	I	E	S	E	H	S	E	R	R	R	I	K	A	E	R	L	E	R	I	A	I	S	A	X	K	Q	S	L	K	A	S	F	P	V	I	R	V	N	I	P	I	Q	T	V	I	A
Template Known Secondary structure			S										S	S																	S								T	T	S			S																		T	T		S	B
Template Predicted Secondary structure
Template SS confidence
		74	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.
		264	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.					.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.			.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.
Predicted Secondary structure																								.	.	.	.																														.	.
Query SS confidence																								.	.	.	.																														.	.
Query Sequence		D	F	R	Q	A	G	Y	T	V	V	T	T	S	S	E	Q	G	K	P	L	F	K	.	.	.	.	T	S	L	P	A	K	M	V	L	V	L	G	Q	E	Y	E	G	L	P	D	A	A	R	D	P	N	D	L	R	.	.	V	K	I	D	G	T	G	N	V	A	G	L	N	I	S	V	A	T	G	V	L	L	G
Query Conservation																								.	.	.	.																														.	.
Alig confidence																								.	.	.	.																.														.	.
Template Conservation																																											.
Template Sequence		D	T	P	K	A	A	V	R	L	I	A	Y	V	D	E	A	V	R	G	R	G	Y	P	S	D	F	Y	H	V	G	Q	D	V	L	I	L	I	G	P	E	G	.	D	F	S	P	S	E	V	E	S	A	L	L	A	G	F	A	P	V	S	L	G	E	S	R	L	R	T	E	T	A	G	L	V	A	C	Q	W	I
Template Known Secondary structure			S		T	T	S									T	T							G	G	G	T			T	T	S									T	T	.														T								S	S
Template Predicted Secondary structure																																											.
Template SS confidence
		154	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.		.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.
		338	.	340	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	W	W	R
Query Conservation
Alig confidence
Template Conservation
Template Sequence		H	T	L	Q
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		238	.	240	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions