Job Description P0AGJ5 Confidence 100.00% Date Thu Jan 5 11:29:19 GMT 2012 Rank 4 Aligned Residues 228 % Identity 20% Template c2i6dA_ PDB info PDB header:transferase Chain: A: PDB Molecule:rna methyltransferase, trmh family; PDBTitle: the structure of a putative rna methyltransferase of the trmh family2 from porphyromonas gingivalis. Resolution 1.85 Å

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		102	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	Q	R	A	E	E	T	R	V	Y	G	E	N	A	C	Q	A	L	F	Q	S	R	P	E	A	I	V	R	A	W	F	I	Q	S	V	T	P	R	F	K	E	A	L	R	W	M	A	A	N	R	K	A	Y	H	V	V	D	E	A	E	L	T	K	A	S	G	T	E	H	H	G	G	V	C	F	L	I	K	K	R
Query Conservation
Alig confidence																																		.	.	.	.	.	.	.
Template Conservation																																		.	.	.	.	.	.	.
Template Sequence		R	L	R	E	Q	A	F	A	V	E	G	P	K	L	V	G	E	X	L	P	F	Y	R	C	R	X	L	V	G	T	A	A	.	.	.	.	.	.	.	X	L	R	A	V	S	T	P	H	D	A	E	V	V	E	L	P	E	S	F	D	F	K	R	I	S	T	Q	T	T	P	Q	P	L	X	A	V	F	D	L	P
Template Known Secondary structure						T						S								G	G	G	S											.	.	.	.	.	.	.				T	S				T	T								T	T			G	G	G	T			S	S	S			S
Template Predicted Secondary structure																																		.	.	.	.	.	.	.
Template SS confidence
		19	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50								.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.
		182	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.		230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260
Predicted Secondary structure																																																		.
Query SS confidence																																																		.
Query Sequence		N	G	T	T	V	Q	Q	W	V	S	Q	A	G	A	Q	D	C	V	L	A	L	E	N	E	S	N	P	H	N	L	G	G	M	M	R	S	C	A	H	F	G	V	K	G	V	V	V	Q	.	D	A	A	L	L	E	S	G	A	A	I	R	T	A	E	G	G	A	E	H	V	Q	P	I	T	G	D	N	I	V	N
Query Conservation																																																		.
Alig confidence								.	.	.	.	.	.	.																																				.
Template Conservation								.	.	.	.	.	.	.
Template Sequence		A	E	P	E	P	V	.	.	.	.	.	.	.	V	E	G	L	T	L	L	L	D	G	V	Q	D	P	G	N	V	G	T	I	L	R	T	A	D	W	F	G	I	R	H	V	W	L	G	T	G	S	A	D	V	F	S	P	K	V	V	Q	A	S	X	G	A	L	A	R	V	Q	P	T	P	L	K	N	T	V	D
Template Known Secondary structure								.	.	.	.	.	.	.			S							S																		T								T	T				T	T	S						T	S	T	T	G	G	G	T							S
Template Predicted Secondary structure								.	.	.	.	.	.	.
Template SS confidence
		92	.	.	.	.	.								.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.
		261	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.			.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.		.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.
Predicted Secondary structure																									.	.																																							.
Query SS confidence																									.	.																																							.
Query Sequence		V	L	D	D	F	R	Q	A	G	Y	T	V	V	T	T	S	S	E	Q	G	K	P	L	.	.	F	K	T	S	L	P	A	K	M	V	L	V	L	G	Q	E	Y	E	G	L	P	D	A	A	R	D	P	N	D	L	R	V	K	I	D	G	T	G	.	N	V	A	G	L	N	I	S	V	A	T	G	V	L	L	G
Query Conservation																									.	.																																							.
Alig confidence																									.	.																																							.
Template Conservation
Template Sequence		T	L	A	Y	F	R	R	Q	G	I	P	V	Y	G	A	F	L	D	G	Q	S	L	Y	E	A	P	L	P	N	F	T	E	P	A	I	L	V	L	G	S	E	G	R	G	I	S	P	E	V	A	A	E	I	T	D	R	L	T	I	P	A	S	G	L	S	V	E	S	L	N	V	A	I	A	T	A	I	L	C	S
Template Known Secondary structure									T	T													T	T	T	S					T	T	S								B	T	T	T	B	S						T	T		S									S	S
Template Predicted Secondary structure
Template SS confidence
		165	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.
		338	.	340	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	W	W	R	Q	N
Query Conservation
Alig confidence
Template Conservation
Template Sequence		E	W	R	R	R	S
Template Known Secondary structure						T
Template Predicted Secondary structure
Template SS confidence
		249	250	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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