Job Description P0AGJ5 Confidence 100.00% Date Thu Jan 5 11:29:19 GMT 2012 Rank 3 Aligned Residues 228 % Identity 21% Template c1x7pB_ PDB info PDB header:transferase Chain: B: PDB Molecule:rrna methyltransferase; PDBTitle: crystal structure of the spou methyltransferase avirb from2 streptomyces viridochromogenes in complex with the cofactor adomet Resolution 2.55 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		102	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	Q	R	A	E	E	T	R	V	Y	G	E	N	A	C	Q	A	L	F	Q	S	R	P	E	A	I	V	R	A	W	F	I	Q	S	V	T	P	R	F	K	E	A	L	R	W	M	A	A	N	R	K	A	Y	H	V	V	D	E	A	E	L	T	K	A	S	G	T	E	H	H	G	G	V	C	F	L	I	K	K	R
Query Conservation
Alig confidence																								.																							.	.	.	.	.	.	.	.	.	.
Template Conservation																								.																							.	.	.	.	.	.	.	.	.	.
Template Sequence		R	T	R	A	G	E	F	L	V	M	G	V	R	P	I	S	L	A	V	E	H	G	.	W	P	V	R	T	L	L	Y	D	R	E	L	S	K	W	A	R	E	L	L	R	T	.	.	.	.	.	.	.	.	.	.	V	R	T	E	Q	I	A	M	A	P	D	L	L	M	P	P	E	V	V	A	V	V	E	M	P
Template Known Secondary structure						T						S										T	T	.									.												T	T	.	.	.	.	.	.	.	.	.	.	S		S							T	G	G	G				S
Template Predicted Secondary structure																								.																							.	.	.	.	.	.	.	.	.	.
Template SS confidence
		35	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.		.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.											.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.
		182	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.		230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260
Predicted Secondary structure																																																		.
Query SS confidence																																																		.
Query Sequence		N	G	T	T	V	Q	Q	W	V	S	Q	A	G	A	Q	D	C	V	L	A	L	E	N	E	S	N	P	H	N	L	G	G	M	M	R	S	C	A	H	F	G	V	K	G	V	V	V	Q	.	D	A	A	L	L	E	S	G	A	A	I	R	T	A	E	G	G	A	E	H	V	Q	P	I	T	G	D	N	I	V	N
Query Conservation																																																		.
Alig confidence									.	.	.																																							.
Template Conservation									.	.	.
Template Sequence		A	D	D	L	D	R	I	.	.	.	P	V	R	E	D	F	L	G	V	L	F	D	R	P	T	S	P	G	N	I	G	S	I	I	R	S	A	D	A	L	G	A	H	G	L	I	V	A	G	H	A	A	D	V	Y	D	P	K	S	V	R	S	S	T	G	S	L	F	S	L	P	A	V	R	V	P	S	P	G	E
Template Known Secondary structure					G	G	G	S	.	.	.				T	T								S																	T	T								S	S				T	T	S								T	T	G	G	G	T	S						S
Template Predicted Secondary structure									.	.	.
Template SS confidence
		114	.	.	.	.	.	120				.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190
		261	.	.	.	.	.	.	.						.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.
Predicted Secondary structure										.	.	.	.	.
Query SS confidence										.	.	.	.	.
Query Sequence		V	L	D	D	F	R	Q	A	.	.	.	.	.	G	Y	T	V	V	T	T	S	S	E	Q	G	K	P	L	F	K	T	S	L	P	A	K	M	V	L	V	L	G	Q	E	Y	E	G	L	P	D	A	A	R	D	P	N	D	L	R	V	K	I	D	G	T	G	N	V	A	G	L	N	I	S	V	A	T	G	V	L
Query Conservation										.	.	.	.	.
Alig confidence										.	.	.	.	.
Template Conservation
Template Sequence		V	M	D	W	V	E	A	R	R	A	A	G	T	P	I	V	L	V	G	T	D	E	H	G	D	C	D	V	F	D	F	D	F	T	Q	P	T	L	L	L	I	G	N	E	T	A	G	L	S	N	A	W	R	T	L	C	D	Y	T	V	S	I	P	M	A	G	S	A	S	S	L	N	A	A	N	A	A	T	A	I
Template Known Secondary structure												T	T										T	T		S			G	G	G	S		T	T	S									S	S	S		S									S								S		S	S
Template Predicted Secondary structure
Template SS confidence
		191	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270
		336	.	.	.	340	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	G	E	W	W	R	Q	N
Query Conservation
Alig confidence
Template Conservation
Template Sequence		L	Y	E	A	V	R	Q	R
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		271	.	.	.	.	.	.	.

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions