Job Description P77726 Confidence 99.94% Date Thu Jan 5 12:32:08 GMT 2012 Rank 4 Aligned Residues 376 % Identity 12% Template c3o7pA_ PDB info PDB header:transport protein Chain: A: PDB Molecule:l-fucose-proton symporter; PDBTitle: crystal structure of the e.coli fucose:proton symporter, fucp (n162a) Resolution 3.20 Å

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		12	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	A	T	W	G	L	G	T	V	F	S	L	R	M	L	G	M	F	M	V	L	P	V	L	T	T	Y	G	M	A	L	Q	G	A	S	E	A	L	I	G	I	A	I	G	I	Y	G	L	T	Q	A	V	F	Q	I	P	F	G	L	L	S	D	R	I	G	R	K	P	L	I	V	G	G	L	A	V	F	A	A	G
Query Conservation
Alig confidence																																	.
Template Conservation																																	.
Template Sequence		R	S	Y	I	I	P	F	A	L	L	C	S	L	F	F	L	W	A	V	A	N	N	L	N	D	I	L	L	P	Q	F	.	Q	Q	A	F	F	Q	A	G	L	I	Q	S	A	F	Y	F	G	Y	F	I	I	P	I	P	A	G	I	L	M	K	K	L	S	Y	K	A	G	I	I	T	G	L	F	L	Y	A	L	G
Template Known Secondary structure			T	T	T																												.		T	T			T	T													T	T											S
Template Predicted Secondary structure																																	.
Template SS confidence
		22	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.		.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100
		92	.	.	.	.	.	.				.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.			.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.
Predicted Secondary structure									.	.	.																									.	.
Query SS confidence									.	.	.																									.	.
Query Sequence		S	V	I	A	A	L	S	.	.	.	D	S	I	W	G	I	I	L	G	R	A	L	Q	G	S	G	A	I	A	A	A	V	M	A	.	.	L	L	S	D	L	T	R	E	Q	N	R	T	K	A	M	A	F	I	G	V	S	F	G	I	T	F	A	I	A	M	V	L	G	P	I	I	T	H	K	L	G	L	H	A
Query Conservation									.	.	.																									.	.
Alig confidence									.	.	.																									.	.
Template Conservation
Template Sequence		A	A	L	F	W	P	A	A	E	I	M	N	Y	T	L	F	L	V	G	L	F	I	I	A	A	G	L	G	C	L	E	T	A	A	N	P	F	V	T	V	L	G	P	E	S	S	G	H	F	R	L	N	L	A	Q	T	F	A	S	F	G	A	I	I	A	V	V	F	G	Q	S	L	I	L	S	N	V	P	H	Q
Template Known Secondary structure				T							T	T																														S	S		G	G	G																										T	T	S	S	S	S
Template Predicted Secondary structure
Template SS confidence
		105	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.
		167	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.																												.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		L	F	W	M	I	A	I	L	A	T	T	G	I	A	L	T	I	W	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	V	V	P	N	S	S	T	H	V	L	N	R	E	S	G	M	V	K	G	S	F	S	K	V	L	A	E	P	R	L	L	K	L	N	F
Query Conservation																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		S	Q	D	V	L	D	K	M	S	P	E	Q	L	S	A	Y	K	H	S	L	V	L	S	V	Q	T	P	Y	M	I	I	V	A	I	V	L	L	V	A	L	L	I	M	L	T	K	F	P	A	L	Q	S	D	N	H	S	D	A	K	Q	G	S	F	S	A	S	L	S	R	L	A	R	I	R	H	W	R	W	A	V
Template Known Secondary structure									S																	T	T																			S						T	T	T					S	S	T	T	S
Template Predicted Secondary structure
Template SS confidence
		185	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.
		220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	I	M	C	L	H	I	L	L	M	S	T	F	V	A	L	P	G	Q	L	A	D	A	G	F	P	A	A	E	H	W	K	V	Y	L	A	T	M	L	I	A	F	G	S	V	V	P	F	I	I	Y	A	E	V	K	R	K	M	K	Q	V	F	V	F	C	V	G	L	I	V	V	A	E	I	V	L	W	N	A	Q
Query Conservation
Alig confidence
Template Conservation
Template Sequence		L	A	Q	F	C	Y	V	G	A	Q	T	A	C	W	S	Y	L	I	R	Y	A	V	E	E	I	P	G	M	T	A	G	F	A	A	N	Y	L	T	G	T	M	V	C	F	F	I	G	R	F	T	G	T	W	L	I	S	R	F	A	P	H	K	V	L	A	A	Y	A	L	I	A	M	A	L	C	L	I	S	A	F
Template Known Secondary structure																										S	T	T																															S
Template Predicted Secondary structure
Template SS confidence
		265	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.
		300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.		.	.	.	370	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																																					.
Query SS confidence																																																																					.
Query Sequence		T	Q	F	W	Q	L	V	V	G	V	Q	L	F	F	V	A	F	N	L	M	E	A	L	L	P	S	L	I	S	K	E	S	P	A	G	Y	K	G	T	A	M	G	V	Y	S	T	S	Q	F	L	G	V	A	I	G	G	S	L	G	G	W	I	N	G	M	F	D	.	G	Q	G	V	F	L	A	G	A	M	L	A
Query Conservation																																																																					.
Alig confidence																																									.	.																											.
Template Conservation																																									.	.
Template Sequence		A	G	G	H	V	G	L	I	A	L	T	L	C	S	A	F	M	S	I	Q	Y	P	T	I	F	S	L	G	I	K	N	L	G	Q	D	T	K	Y	G	.	.	S	S	F	I	V	M	T	I	I	G	G	G	I	V	T	P	V	M	G	F	V	S	D	A	A	G	N	I	P	T	A	E	L	I	P	A	L	C	F
Template Known Secondary structure		S																	T	T											S	S		G	G	G					.	.							G	G	G																	T	S	S	G	G	G	G
Template Predicted Secondary structure																																									.	.
Template SS confidence
		345	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.			.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.
		379	380	.	.	.	.	.	.	.	.	.	390
Predicted Secondary structure
Query SS confidence
Query Sequence		A	V	W	L	T	V	A	S	T	M	K	E
Query Conservation
Alig confidence
Template Conservation
Template Sequence		A	V	I	F	I	F	A	R	F	R	S	Q
Template Known Secondary structure									T	S
Template Predicted Secondary structure
Template SS confidence
		423	.	.	.	.	.	.	430	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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