Job Description Q9S4X4 Confidence 18.31% Date Thu Jan 5 12:38:28 GMT 2012 Rank 14 Aligned Residues 45 % Identity 18% Template c1s9vA_ PDB info PDB header:immune system Chain: A: PDB Molecule:hla class ii histocompatibility antigen, dq(3) PDBTitle: crystal structure of hla-dq2 complexed with deamidated2 gliadin peptide Resolution 2.22 Å

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		43	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.											.	.	.	.	.	.	80	.	.	.	.	.	.	.	.
Predicted Secondary structure																																	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																	.	.	.	.	.	.	.	.	.	.
Query Sequence		G	P	C	G	Y	E	V	N	I	S	S	Q	G	D	N	F	I	Q	V	D	F	D	T	P	W	C	Q	P	E	S	D	.	.	.	.	.	.	.	.	.	.	V	I	A	V	L	S	R	R	F	S	C	T	L	E	H
Query Conservation																																	.	.	.	.	.	.	.	.	.	.
Alig confidence																	.																.	.	.	.	.	.	.	.	.	.
Template Conservation																	.
Template Sequence		F	P	P	V	V	N	I	T	W	L	S	N	G	H	S	.	V	T	E	G	V	S	E	T	S	F	L	S	K	S	D	H	S	F	F	K	I	S	Y	L	T	L	L	P	S	A	E	E	S	Y	D	C	K	V	E	H
Template Known Secondary structure			S	S									T	T			.			S	S										T	T	S														T	T
Template Predicted Secondary structure																	.
Template SS confidence
		113	.	.	.	.	.	.	120	.	.	.	.	.	.	.		.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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