Job Description Q9S4X4 Confidence 11.40% Date Thu Jan 5 12:38:28 GMT 2012 Rank 57 Aligned Residues 45 % Identity 18% Template c1d9kD_ PDB info PDB header:immune system Chain: D: PDB Molecule:mhc i-ak b chain (beta chain); PDBTitle: crystal structure of complex between d10 tcr and pmhc i-ak/ca Resolution 3.20 Å

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		43	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.											.	.	.	.	.	.	80	.	.	.	.	.	.	.	.
Predicted Secondary structure																																	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																	.	.	.	.	.	.	.	.	.	.
Query Sequence		G	P	C	G	Y	E	V	N	I	S	S	Q	G	D	N	F	I	Q	V	D	F	D	T	P	W	C	Q	P	E	S	D	.	.	.	.	.	.	.	.	.	.	V	I	A	V	L	S	R	R	F	S	C	T	L	E	H
Query Conservation																																	.	.	.	.	.	.	.	.	.	.
Alig confidence																.																	.	.	.	.	.	.	.	.	.	.
Template Conservation																.
Template Sequence		Y	P	A	K	I	K	V	R	W	F	R	N	G	Q	.	E	E	T	V	G	V	S	S	T	Q	L	I	R	N	G	D	W	T	F	Q	V	L	V	M	L	E	M	T	P	R	R	G	E	V	Y	T	C	H	V	E	H
Template Known Secondary structure		B	S	S									T	T		.				S	S	B									S	S	S														T	T
Template Predicted Secondary structure																.
Template SS confidence
		123	.	.	.	.	.	.	130	.	.	.	.	.	.		.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions