Job Description P17315 Confidence 45.53% Date Thu Jan 5 11:36:04 GMT 2012 Rank 38 Aligned Residues 129 % Identity 8% Template c3qq2C_ PDB info PDB header:membrane protein/protein transport Chain: C: PDB Molecule:brka autotransporter; PDBTitle: crystal structure of the beta domain of the bordetella autotransporter2 brka Resolution 3.00 Å

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		524	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.			.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570							.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.
Predicted Secondary structure																								.	.																										.	.	.	.	.	.
Query SS confidence																								.	.																										.	.	.	.	.	.
Query Sequence		N	K	A	R	I	Q	G	V	E	T	E	L	K	I	P	F	N	D	E	W	K	L	.	.	S	I	N	Y	T	Y	N	D	G	R	D	V	S	N	G	E	N	K	P	L	S	D	L	P	F	.	.	.	.	.	.	H	T	A	N	G	T	L	D	W	K	P	L	A	L	E	D	W	S	F	Y	V	S	G	H	Y
Query Conservation																								.	.																										.	.	.	.	.	.
Alig confidence																								.	.																										.	.	.	.	.	.
Template Conservation
Template Sequence		T	S	G	A	A	W	S	L	E	G	G	R	R	F	E	L	P	N	D	W	F	A	E	P	Q	A	E	V	M	L	W	R	T	S	G	K	R	Y	R	A	S	N	G	L	R	V	K	V	D	A	N	T	A	T	L	G	R	L	G	L	R	F	G	R	R	I	A	L	A	G	G	N	I	V	Q	P	Y	A	R	L
Template Known Secondary structure													B					G	G	G																						S	S	S																										T	T	S
Template Predicted Secondary structure
Template SS confidence
		861	.	.	.	.	.	.	.	.	870	.	.	.	.	.	.	.	.	.	880	.	.	.	.	.	.	.	.	.	890	.	.	.	.	.	.	.	.	.	900	.	.	.	.	.	.	.	.	.	910	.	.	.	.	.	.	.	.	.	920	.	.	.	.	.	.	.	.	.	930	.	.	.	.	.	.	.	.	.	940
		596	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	G	Q	K	R	A	D	S	A	T	A	K	T	P	G	G	Y	T	I	W	N	T	G	A	A	W	Q	V	T	K	D	V	K	L	R	A	G	V	L	N	L	G	D	K	D	L	S	R	D	D	Y	S	Y	N	E	D	G	R	R	Y	F	M	A	V	D	Y	R	F
Query Conservation
Alig confidence																.	.	.																																		.	.	.	.	.	.	.	.
Template Conservation																.	.	.																																		.	.	.	.	.	.	.	.
Template Sequence		G	W	T	Q	E	F	K	S	T	G	R	H	G	R	.	.	.	V	E	L	G	A	G	V	D	A	A	L	G	K	G	H	N	L	Y	A	S	Y	E	Y	A	A	G	D	R	I	N	I	P	W	.	.	.	.	.	.	.	.	S	F	H	A	G	Y	R	Y	S	F
Template Known Secondary structure													B			.	.	.												G	G	G	B												S	S						.	.	.	.	.	.	.	.								B
Template Predicted Secondary structure																.	.	.																																		.	.	.	.	.	.	.	.
Template SS confidence
		941	.	.	.	.	.	.	.	.	950	.	.	.	.				.	.	.	.	.	960	.	.	.	.	.	.	.	.	.	970	.	.	.	.	.	.	.	.	.	980	.	.	.	.	.	.	.									.	.	990	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions