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Job DescriptionP17315
Confidence39.94%DateThu Jan 5 11:36:04 GMT 2012
Rank39Aligned Residues125
% Identity14%Templatec2y0kA_
PDB info PDB header:transport proteinChain: A: PDB Molecule:pyroglutatmate porin opdo; PDBTitle: crystal structure of pseudomonas aeruginosa opdo
Resolution2.30 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   525....530.........540.........550..... ....560.........570.........580... ......590
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Query Sequence  KARIQGVETELKIPFNDEWKLSINYTYNDGR. . . . . . . . . . . . DVSNGENKPLSDLPFHTANGTLDWKPLA. . LEDWSFY
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Template Sequence  DNRAFGALFSLRL. . . GAHAVAAGYQRISGDDPYPYIAGSDPYLVNFIQIGDFGNVDERSWQLRYDYDFGALGLPGLSFM
Template Known Secondary structure  ...TTSSS



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TT
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   239240.........250. ........260.........270.........280.........290.........300.........310.....
 
   591........600.........610.........620.... .....630.........640.........650.........660...
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Query Sequence  VSGHYTGQKRADSATAKTPGGYTIWNTGAAWQVT. . . . KDVKLRAGVLNLGDKDLSRDDYSYNEDGRRYFMAVDYRF
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Template Sequence  SRYVSGDNVARGAANDGKE. . . WERNTDLGYVVQSGPLKNLGVKW. . . . . . . . RNATVRSNFANDLDENRLILSYSL
Template Known Secondary structure  TT...

SSTTTT
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   316...320.........330.... .....340.........350....... ..360.........370.........380.
 
Download:Text version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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