Job Description P17315 Confidence 6.98% Date Thu Jan 5 11:36:04 GMT 2012 Rank 58 Aligned Residues 125 % Identity 10% Template c2qtkB_ PDB info PDB header:membrane protein Chain: B: PDB Molecule:probable porin; PDBTitle: crystal structure of the outer membrane protein opdk from2 pseudomonas aeruginosa Resolution 2.80 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		525	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.														.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.			.	.	.	.	.	.
Predicted Secondary structure																																							.	.	.	.	.	.	.	.	.	.	.	.	.																							.	.
Query SS confidence																																							.	.	.	.	.	.	.	.	.	.	.	.	.																							.	.
Query Sequence		K	A	R	I	Q	G	V	E	T	E	L	K	I	P	F	N	D	E	W	K	L	S	I	N	Y	T	Y	N	D	G	R	D	V	S	N	G	E	.	.	.	.	.	.	.	.	.	.	.	.	.	N	K	P	L	S	D	L	P	F	H	T	A	N	G	T	L	D	W	K	P	L	A	.	.	L	E	D	W	S	F
Query Conservation																																							.	.	.	.	.	.	.	.	.	.	.	.	.																							.	.
Alig confidence															.	.	.																						.	.	.	.	.	.	.	.	.	.	.	.	.																							.	.
Template Conservation															.	.	.
Template Sequence		D	S	H	T	V	Y	G	L	F	S	A	G	I	.	.	.	G	L	H	T	F	Y	L	G	L	Q	K	V	G	G	D	S	G	W	Q	S	V	Y	G	S	S	G	R	S	M	G	N	D	M	F	N	G	N	F	T	N	A	D	E	R	S	W	Q	V	R	Y	D	Y	D	F	V	G	L	G	W	P	G	L	I	G
Template Known Secondary structure															.	.	.	T	T													S	S					B	T	T			G	G	G	S	T	T		B	T	T	B				S	B	T												G	G	G	G	T		T	T
Template Predicted Secondary structure															.	.	.
Template SS confidence
		245	.	.	.	.	250	.	.	.	.	.	.	.				.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.
		590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.					.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.
Predicted Secondary structure																																					.	.	.	.
Query SS confidence																																					.	.	.	.
Query Sequence		Y	V	S	G	H	Y	T	G	Q	K	R	A	D	S	A	T	A	K	T	P	G	G	Y	T	I	W	N	T	G	A	A	W	Q	V	T	.	.	.	.	K	D	V	K	L	R	A	G	V	L	N	L	G	D	K	D	L	S	R	D	D	Y	S	Y	N	E	D	G	R	R	Y	F	M	A	V	D	Y	R	F
Query Conservation																																					.	.	.	.
Alig confidence																						.	.	.													.	.	.	.									.	.	.	.	.	.	.	.
Template Conservation																						.	.	.																									.	.	.	.	.	.	.	.
Template Sequence		M	V	R	Y	G	H	G	S	N	A	T	T	K	A	G	S	G	G	K	E	.	.	.	W	E	R	D	V	E	L	G	Y	T	V	Q	S	G	P	L	A	R	L	N	V	R	L	N	.	.	.	.	.	.	.	.	H	A	S	N	R	R	S	F	N	S	D	F	D	Q	T	R	L	V	V	S	Y	P	L
Template Known Secondary structure												B		S	S		S					.	.	.													S	S	S	S	T	T							.	.	.	.	.	.	.	.							S	S	S
Template Predicted Secondary structure																						.	.	.																									.	.	.	.	.	.	.	.
Template SS confidence
		322	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.				.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.									.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions