 |
Job Description | P17315 | Confidence | 6.91% | Date | Thu Jan 5 11:36:04 GMT 2012 |
Rank | 59 | Aligned Residues | 73 |
% Identity | 14% | Template | c2ihmA_ |
PDB info |
PDB header:transferase/dna | Chain: A: PDB Molecule:dna polymerase mu; |
PDBTitle: polymerase mu in ternary complex with gapped 11mer dna2 duplex and bound incoming nucleotide
|
Resolution | 2.40 Å |
|
 |
  |   |
2 | . | . | . | . | . | . | . | 10 | . | . | . | . | . | . | . | . | . | 20 | . | . | . | . | . | . | . | . | . | 30 | . | . | . | . | . | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60 | . | . | . | . | . | . | . | . | . | 70 | . | . | . | . | . | . | . |
Predicted Secondary structure |   |
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|  |  |  |  |  |  |
|
|
|
|
|  |  |  |
|
|
|  |  |  |  |  |
|  |  |  |  |  |  |
|
|
|
|
|  |  |  |  |  |  |  |
|
|
|  |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
F | R | L | N | P | F | V | R | V | G | L | C | L | S | A | I | S | C | A | W | P | V | L | A | V | D | D | D | G | E | T | M | V | V | T | A | S | S | V | E | Q | N | L | K | D | A | P | A | S | I | S | V | I | T | Q | E | D | L | Q | R | K | P | V | Q | N | L | K | D | V | L | K | E | V | P | G | V |
Query Conservation |   |
|
|   |   |   |   |   |   |   |   |
|   |   |   |   |   |   |   |
|   |   |   |   |
|   |   |   |   |
|
|
|
|
|
|
|
|   |   |   |   |   |   |   |   |   |   |
|   |
|
|   |
|
|   |   |   |   |
|   |   |   |   |   |   |   |   |   |
|   |
|   |   |
|
|
|
|
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
  |
|   |   |
|
|   |   |
|
|   |   |
|   |   |   |   |   |   |
|   |   |   |   |   |   |   |   |
|
|
|
| . | . | . |
|   |   |
|
|   |
|
|   |
|   |
|   |
|
|   |   |   |   |
|
|   |
|   |   |   |   |   |   |   |   |
|   |   |
|   |   |
|   |
|
|
Template Sequence |   |
G | R | L | L | S | F | S | R | A | A | S | V | L | K | S | L | P | C | P | V | A | S | L | S | Q | L | H | G | L | P | Y | F | . |
. |
. |
G | E | H | S | T | R | V | I | Q | E | L | L | E | H | G | T | C | E | E | V | K | Q | V | R | C | S | E | R | Y | Q | T | M | K | L | F | T | Q | V | F | G | V |
Template Known Secondary structure |   |
 |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
| S | S |
|
|
| S | G | G | G | G | T | T |
| T | T |
| . | . | . |
|  |  |  |  |  |  |  |  |  |  |  |  |  | S |
|
|  |  |  |  |  |  |  |  | S |  |  |  |  |  |  |  |  |  |  | T | S | T | T |
|
Template Predicted Secondary structure |   |
 |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|
|
|  |  |  |  |  |  |
|
|
|
| . | . | . |
|  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |  |  |  |  |
|
|
|
|
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
174 | . | . | . | . | . | 180 | . | . | . | . | . | . | . | . | . | 190 | . | . | . | . | . | . | . | . | . | 200 | . | . | . | . | . | |
|
|
. | . | . | . | 210 | . | . | . | . | . | . | . | . | . | 220 | . | . | . | . | . | . | . | . | . | 230 | . | . | . | . | . | . | . | . | . | 240 | . | . | . | . | . | . |
  |
No model constructed - rank, confidence too low
Phyre is for academic use only
Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
  |
|
|