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Job DescriptionP17315
Confidence100.00%DateThu Jan 5 11:36:04 GMT 2012
Rank2Aligned Residues613
% Identity15%Templatec2iahA_
PDB info PDB header:membrane proteinChain: A: PDB Molecule:ferripyoverdine receptor; PDBTitle: crystal structure of the ferripyoverdine receptor of the outer2 membrane of pseudomonas aeruginosa bound to ferripyoverdine.
Resolution2.73 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   1920.........30.........40.........50.........60.........70.........80.........90........
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Query Sequence  CAWPVLAVDDDGETMVVTASSVEQNLKDAPASISVITQEDLQRKPVQNLKDVLKEVPGVQLTNEGDNRKGVSIRGLDSSY
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Template Sequence  VATITEDSGSYTPGTIATATRLVLTPRETPQSITVVTRQNMDDFGLNNIDDVMRHTPGITVSAYDTDRNNYYARGFSINN
Template Known Secondary structure 




TT


SS
S
B
SSSSS
B
GGG

STT

BTTSTT
TTTT


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   117..120.........130.........140.........150.........160.........170.........180.........190......
 
   99100.........110.........120.........130.........140.........150.........160.........170........
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Query Sequence  TLILVDGKRVNSRNAVFRHNDFDLNWIPVDSIERIEVVRGPMSSLYGSDALGGVVNIITKKIGQKWSGTVTVDTTIQEHR
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Template Sequence  . . FQYDGIPSTARNVGYSAG. . . NTLSDMAIYDRVEVLKGATGLLTGAGSLGATINLIRKKPTHEFKGHVELGAGSWDNY
Template Known Secondary structure  ..TT




GGG

S...TTS
BGGG


S

S



SS
TTT
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   217..220.........230.... .....240.........250.........260.........270.........280.........290.
 
   179180.........190.........200.........210.........220.........230.........240.........250........
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Query Sequence  DRGDTYNGQFFTSGPLIDGVLGMKAYGSLAKREKDDPQNSTTTDTGETPRIEGFSSRDGNVEFAWTPNQNHDFTAGYGFD
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Template Sequence  RSELDVSGPLTESGNVRGRAVAAYQDKHSFMDHYERKTSVYYGILEFDLNPDTMLTVGADYQDNDPKGSGWSGSFPLFDS
Template Known Secondary structure 
SSS
S
SSTT
TTS


SSSSSBT
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   292.......300.........310.........320.........330.........340.........350.........360.........370.
 
   259260.........270.........280.........290.........300.........310.........320.........330........
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Query Sequence  RQDRDSDSLDKNRLERQNYSVSHNGRWDYGTSELKYYGEKVENKNPGNSSPITSESNTVDGKYTLPLTAINQFLTVGGEW
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Template Conservation                                                                                  
Template Sequence  QGNRNDVSRSFNNGAKWSSWEQYTRTVFANLEHNFANGWVGKVQLDHKINGYHAPLGAIMGDWPAPDNSAKIVAQKYTGE
Template Known Secondary structure  TBS




TT


B
TT



TTS

SS


TTS
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   372.......380.........390.........400.........410.........420.........430.........440.........450.
 
   339340.. .......350.........360....
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Query Sequence  RHDK. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . LSDAVNLTGGTSSKTSASQYAL
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Template Conservation                                                                                  
Template Sequence  TKSNSLDIYLTGPFQFLGREHELVVGTSASFSHWEGKSYWNLRNYDNTTDDFINWDGDIGKPDWGTPSQYIDDKTRQLGS
Template Known Secondary structure  SSS








S
STT

S







S
S
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   452.......460.........470.........480.........490.........500.........510.........520.........530.
 
   365....370.........380.........390.........400.........410.........420.........430.........440....
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Query Sequence  FVEDEWRIFEPLALTTGVRMDDHETYGEHWSPRAYLVYNATDTVTVKGGWATAFKAPSLLQLSPDWTSNSCRGACKIVGS
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Template Conservation                    
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Template Sequence  YMTARFNVTDDLNLFLGGRVVDYRVTGLN. . . . . . PTIRESGRFIPYVGAVYDLNDTYSVYASYTDIFMPQDSWYRDSSN
Template Known Secondary structure 

SSSSS......

SSSS


TT
B
TTS
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   532.......540.........550.........560 .........570.........580.........590.........600.....
 
   445....450.........460.........470.........480.........490.........500.........510.........520....
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Query Sequence  PDLKPETSESWELGLYYMGEEGWLEGVESSVTVFRNDVKDRISISRTSDVNAAPGYQNFVGFETGANGRRIPVFSYYNVN
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Template Sequence  KLLEPDEGQNYEIGIKGEYLD. . . GRLNTSLAYFEIHEENRAEEDALYNSKPT. . . . . . . . . . . . . . . . NPAITYAYKGI
Template Known Secondary structure 
B


GG...GT

TS

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TT
SS

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   606...610.........620...... ...630.........640.........650..... ....660......
 
   525....530.........540.........550.........560.........570.........580.... .....590.........600...
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Query Sequence  KARIQGVETELKIPFNDEWKLSINYTYNDGRDVSNGENKPLSDLPFHTANGTLDWKPLAL. EDWSFYVSGHYTGQKRADS
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Template Sequence  KAKTKGYEAEISGELAPGWQVQAGYTHKIIRDDSG. . KKVSTWEPQDQLSLYTSYKFKGALDKLTVGGGARWQGKSWQMV
Template Known Secondary structure  TT


SSS..
B

TTS
S

GGGTT

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   667..670.........680.........690.........700. ........710.........720.........730.........740....
 
   604.. ...610.........620.........630.........640....... ..650.........660...
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Query Sequence  ATA. . . . . . . KTPGGYTIWNTGAAWQVTKDVKLRAGVLNLGDKDLSRDDYS. . . . YNEDGRRYFMAVDYRF
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Template Conservation                 
   

   
       
 
 
 

 
  
              

   
   
 
Template Sequence  YNNPRSRWEKFSQEDYWLVDLMARYQITDKLSASVNVNNVFDKTYYTNIGFYTSASYGDPRNLMFSTRWDF
Template Known Secondary structure  TTTT


SSS
STT




TGGG


S


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   745....750.........760.........770.........780.........790.........800.........810.....
 
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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
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