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Job DescriptionP17315
Confidence100.00%DateThu Jan 5 11:36:04 GMT 2012
Rank4Aligned Residues619
% Identity14%Templatec1xkhC_
PDB info PDB header:membrane proteinChain: C: PDB Molecule:ferripyoverdine receptor; PDBTitle: pyoverdine outer membrane receptor fpva from pseudomonas aeruginosa2 pao1 bound to pyoverdine
Resolution3.60 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   1920.........30.........40.........50.........60.........70.........80.........90........
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Query Sequence  CAWPVLAVDDDGETMVVTASSVEQNLKDAPASISVITQEDLQRKPVQNLKDVLKEVPGVQLTNEGDNRKGVSIRGLDSSY
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Template Sequence  LGTITEDSGSYTPGTIATATRLVLTPRETPQSITVVTRQNXDDFGLNNIDDVXRHTPGITVSAYDTDRNNYYARGFSINN
Template Known Secondary structure  S


SSSS

SS




TTTSS


STT

S


TT

BSTTSTTTTTT

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   137..140.........150.........160.........170.........180.........190.........200.........210......
 
   99100.........110.........120.........130.........140.........150.........160.........170........
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Query Sequence  TLILVDGKRVNSRNAVFRHNDFDLNWIPVDSIERIEVVRGPMSSLYGSDALGGVVNIITKKIGQKWSGTVTVDTTIQEHR
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Template Sequence  . . FQYDGIPSTARNVGYSAG. . . NTLSDXAIYDRVEVLKGATGLLTGAGSLGATINLIRKKPTHEFKGHVELGAGSWDNY
Template Known Secondary structure  ..B
BTTB





STT

S...TT

BSTT
GGGTS
S

SB




SS


TTT
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   217..220.........230.... .....240.........250.........260.........270.........280.........290.
 
   179180.........190.........200.........210.........220.........230.........240.........250........
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Query Sequence  DRGDTYNGQFFTSGPLIDGVLGMKAYGSLAKREKDDPQNSTTTDTGETPRIEGFSSRDGNVEFAWTPNQNHDFTAGYGFD
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Template Conservation                                                                                  
Template Sequence  RSELDVSGPLTESGNVRGRAVAAYQDKHSFXDHYERKTSVYYGILEFDLNPDTXLTVGADYQDNDPKGSGWSGSFPLFDS
Template Known Secondary structure  SSTT
S


SSTT




TTS



S


SSSS
SB
S
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   292.......300.........310.........320.........330.........340.........350.........360.........370.
 
   259260.........270.........280.........290.........300.........310.........320.........330........
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Query Sequence  RQDRDSDSLDKNRLERQNYSVSHNGRWDYGTSELKYYGEKVENKNPGNSSPITSESNTVDGKYTLPLTAINQFLTVGGEW
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Template Conservation                                                                                  
Template Sequence  QGNRNDVSRSFNNGAKWSSWEQYTRTVFANLEHNFANGWVGKVQLDHKINGYHAPLGAIXGDWPAPDNSAKIVAQKYTGE
Template Known Secondary structure  SSSB



TT


B
TT



TTS


SS


TTT



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   372.......380.........390.........400.........410.........420.........430.........440.........450.
 
   339340.. .......350.........360.........370
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Query Sequence  RHDK. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . LSDAVNLTGGTSSKTSASQYALFVEDEW
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Template Conservation                                                                                  
Template Sequence  TKSNSLDIYLTGPFQFLGREHELVVGTSASFSHWEGKSYWNLRNYDNTTDDFINWDGDIGKPDWGTPSQYIDDKTRQLGS
Template Known Secondary structure  SSSS



S




S
SSS








S
S



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   452.......460.........470.........480.........490.........500.........510.........520.........530.
 
   371........380.........390.........400.........410.........420.........430.........440.........450
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Query Sequence  RIFEPLALTTGVRMDDHETYGEHWSPRAYLVYNATDTVTVKGGWATAFKAPSLLQLSPDWTSNSCRGACKIVGSPDLKPE
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Template Conservation                                                                           
  
 

Template Sequence  YXTARFNVTDDLNLFLGGRVVDYRVTGLNPTIRESGRFIPYVGAVYDLNDTYSVYASYTDIFXPQDSWYRDSSNKLLEPD
Template Known Secondary structure  SSSS


SSSS



SSS




TT


SSS





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   532.......540.........550.........560.........570.........580.........590.........600.........610.
 
   451........460.........470.........480.........490.........500.........510.........520.........530
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Query Sequence  TSESWELGLYYMGEEGWLEGVESSVTVFRNDVKDRISISRTSDVNAAPGYQNFVGFETGANGRRIPVFSYYNVNKARIQG
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Template Conservation       
 
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Template Sequence  EGQNYEIGIKGEYLDG. . . RLNTSLAYFEIHEENRAEEDALYNSKPT. . . . . . . . . . . . . . . . NPAITYAYKGIKAKTKG
Template Known Secondary structure  TTT...T
SSTTS


................
TT
S

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   612.......620....... ..630.........640.........650..... ....660.........670..
 
   531........540.........550.........560.........570.........580.... .....590.........600......
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Query Sequence  VETELKIPFNDEWKLSINYTYNDGRDVSNGENKPLSDLPFHTANGTLDWKPLAL. EDWSFYVSGHYTGQKRADSATA. . .
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Template Sequence  YEAEISGELAPGWQVQAGYTHKIIRDDSG. . KKVSTWEPQDQLSLYTSYKFKGALDKLTVGGGARWQGKSWQXVYNNPRS
Template Known Secondary structure  SSSSTT
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B

TTS
S

GGGTT




GGG
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   673......680.........690.........700. ........710.........720.........730.........740.........750
 
   607..610.........620.........630.........640....... ..650.........660...
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Query Sequence  . . . . KTPGGYTIWNTGAAWQVTKDVKLRAGVLNLGDKDLSRDDYS. . . . YNEDGRRYFMAVDYRF
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Template Conservation           
   

   
       
 
 
 

 
  
              

   
   
 
Template Sequence  RWEKFSQEDYWLVDLXARYQITDKLSASVNVNNVFDKTYYTNIGFYTSASYGDPRNLXFSTRWDF
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SSS
TTTT



S
SSS




S


S

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   751........760.........770.........780.........790.........800.........810.....
 
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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
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