Job Description P76584 Confidence 5.98% Date Thu Jan 5 12:24:51 GMT 2012 Rank 73 Aligned Residues 115 % Identity 11% Template c2r5kE_ PDB info PDB header:viral protein Chain: E: PDB Molecule:major capsid protein l1; PDBTitle: pentamer structure of major capsid protein l1 of human2 papilloma virus type 11 Resolution 3.20 Å

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		148	.	150	.	.	.	.	.	.	.	.	.	160	.	.									.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.											.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																	.	.	.	.	.	.	.	.																							.	.	.	.	.	.	.	.	.	.
Query SS confidence																	.	.	.	.	.	.	.	.																							.	.	.	.	.	.	.	.	.	.
Query Sequence		H	P	Y	F	P	L	S	P	Q	T	R	I	Q	A	Q	.	.	.	.	.	.	.	.	A	S	G	Y	W	L	E	R	E	Q	W	L	A	G	E	F	C	E	Q	L	P	Q	.	.	.	.	.	.	.	.	.	.	E	L	D	F	N	Q	P	A	P	L	P	R	Q	W	V	N	N	G	F	A	G	W	N	G	Q
Query Conservation																	.	.	.	.	.	.	.	.																							.	.	.	.	.	.	.	.	.	.
Alig confidence																	.	.	.	.	.	.	.	.																							.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		H	P	Y	Y	S	I	K	K	V	N	K	T	V	V	P	K	V	S	G	Y	Q	Y	R	V	F	K	V	V	L	P	D	P	N	K	F	A	L	P	D	S	S	L	F	D	P	T	T	Q	R	L	V	W	A	C	T	G	L	E	V	G	R	G	Q	P	L	G	V	G	V	S	G	H	P	L	L	N	K	Y	D	D
Template Known Secondary structure		B	S	S	S					S	S	S					B			T	T	B											T	T	T				S				S			T	T	T																S			B
Template Predicted Secondary structure
Template SS confidence
		46	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.
		210						.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.
Predicted Secondary structure			.	.	.	.	.
Query SS confidence			.	.	.	.	.
Query Sequence		A	.	.	.	.	.	R	I	E	Q	P	Q	E	G	Y	A	I	I	M	E	T	T	P	P	A	P	C	Y	F	I	F	V	S	D	P	A	F	D	K	G	Y	A	F	D	F	F	C	L	E	P	M	S	H	A	P	D	D	H
Query Conservation			.	.	.	.	.
Alig confidence			.	.	.	.	.
Template Conservation
Template Sequence		V	E	N	S	G	G	Y	G	G	N	P	G	Q	D	N	R	V	N	V	G	M	D	Y	K	Q	T	Q	L	C	M	V	G	C	A	P	P	L	G	E	H	W	G	K	G	T	Q	S	S	N	T	S	V	Q	N	G	D	C	P
Template Known Secondary structure			S	S			S							S																				S	S														S		S				T	T
Template Predicted Secondary structure
Template SS confidence
		126	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions