Job Description P0ABZ6 Confidence 100.00% Date Thu Jan 5 11:16:47 GMT 2012 Rank 4 Aligned Residues 248 % Identity 22% Template c3rgcB_ PDB info PDB header:chaperone Chain: B: PDB Molecule:possible periplasmic protein; PDBTitle: the virulence factor peb4 and the periplasmic protein cj1289 are two2 structurally related sura-like chaperones in the human pathogen3 campylobacter jejuni Resolution 2.30 Å

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		26	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	K	V	A	A	V	V	N	N	G	V	V	L	E	S	D	V	D	G	L	M	Q	S	V	K	L	N	A	A	Q	A	R	Q	Q	L	P	D	D	A	T	L	R	H	Q	I	M	E	R	L	I	M	D	Q	I	I	L	Q	M	G	Q	K	M	G	V	K	I	S	D	E	Q	L	D	Q	A	I	A	N	I	A	K
Query Conservation
Alig confidence																													.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																													.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		N	A	I	A	V	V	V	D	K	E	P	I	T	T	Y	D	I	D	Q	T	M	K	A	L	K	I	D	.	.	.	.	.	.	.	.	.	.	.	.	.	.	R	N	K	A	L	G	V	L	I	N	E	K	M	E	I	S	Q	M	K	Q	L	G	I	V	V	N	D	L	E	L	D	D	A	I	N	K	M	L	A
Template Known Secondary structure									T	T															S	S			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																					T
Template Predicted Secondary structure																													.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		21	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.															.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.
		106	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.		.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.
Predicted Secondary structure																																													.
Query SS confidence																																													.
Query Sequence		Q	N	N	M	T	L	D	Q	M	R	S	R	L	A	Y	D	G	L	N	Y	N	T	Y	R	N	Q	I	R	K	E	M	I	I	S	E	V	R	N	N	E	V	R	R	.	R	I	T	I	L	P	Q	E	V	E	S	L	A	Q	Q	V	G	N	Q	N	D	A	S	T	E	L	N	L	S	H	I	L	I	P	L	P
Query Conservation																																													.
Alig confidence																																													.																																				.
Template Conservation																																																																																	.
Template Sequence		Q	N	K	T	T	L	N	A	F	K	A	N	L	K	S	K	N	Q	S	Y	E	Q	F	R	T	N	F	K	K	D	L	E	K	R	K	L	Y	E	K	I	A	S	M	A	K	T	D	F	S	D	D	G	A	K	K	F	F	E	Q	N	K	D	K	F	T	F	Y	T	Q	I	N	A	N	I	Y	L	S	N	N	.
Template Known Secondary structure			T	T													T	T																									T	T	S																	G	G	G	G				S										S		.
Template Predicted Secondary structure																																																																																	.
Template SS confidence
		87	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.
		185	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	N	P	T	S	D	Q	V	N	E	A	E	S	Q	A	R	A	I	V	D	Q	A	R	N	G	A	D	F	G	K	L	A	I	A	H	S	A	D	Q	Q	A	L	N	G	G	Q	M	G	W	G	R	I	Q	E	L	P	G	I	F	A	Q	A	L	S	T	A	K	K	G	D	I	V	G	P	I	R	S	G	V	G
Query Conservation
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	P	Q	T	L	E	N	I	K	N	T	K	K	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.										.			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
																	166	.	.	.	170	.	.	.	.	.	.	.
		265	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		F	H	I	L	K	V	N	D	L	R	G	E	S	K	N	I	S	V	T	E	V	H	A	R	H	I	L	L	K	P	S	P	I	M	T	D	E	Q	A	R	V	K	L	E	Q	I	A	A	D	I	K	S	G	K	T	T	F	A	A	A	A	K	E	F	S	Q	D	P	G	S	A	N	Q	G	G	D	L	G	W	A
Query Conservation
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T	I	L	K	P	Q	N	A	S	L
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.			S
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
																																																																								178	.	180	.	.	.	.	.	.	.
		345	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.		.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.
Predicted Secondary structure																																												.
Query SS confidence																																												.
Query Sequence		T	P	D	I	F	D	P	A	F	R	D	A	L	T	R	L	N	K	G	Q	M	S	A	P	V	H	S	S	F	G	W	H	L	I	E	L	L	D	T	R	N	V	.	D	K	T	D	A	A	Q	K	D	R	A	Y	R	M	L	M	N	R	K	F	S	E	E	A	A	S	W	M	Q	E	Q	R	A	S	A	Y	V
Query Conservation																																												.
Alig confidence																																												.
Template Conservation
Template Sequence		N	T	S	N	A	D	P	R	L	L	G	L	L	S	Q	I	P	V	G	S	F	S	P	V	L	N	G	K	N	G	Y	E	L	Y	E	V	K	S	K	D	G	T	Q	T	P	E	Y	E	Q	V	K	N	E	V	L	N	A	Y	V	S	E	Q	R	Q	N	F	I	Q	D	Y	F	D	K	L	R	S	K	I	N	I
Template Known Secondary structure			T	T	T	S											S		T	T									S	S	S					.						S						S	S	S	S																												S
Template Predicted Secondary structure
Template SS confidence
		188	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.
		424	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	I	L
Query Conservation
Alig confidence
Template Conservation
Template Sequence		E	Y	L
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		268	.	270

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions