Job Description P0ABZ6 Confidence 100.00% Date Thu Jan 5 11:16:47 GMT 2012 Rank 3 Aligned Residues 290 % Identity 16% Template c3nrkA_ PDB info PDB header:unknown function Chain: A: PDB Molecule:lic12922; PDBTitle: the crystal structure of the leptospiral hypothetical protein lic12922 Resolution 3.10 Å

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		25	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	D	K	V	A	A	V	V	N	N	G	V	V	L	E	S	D	V	D	G	L	M	Q	S	V	K	L	N	A	A	Q	A	R	Q	Q	L	P	D	D	A	T	L	R	H	Q	I	M	E	R	L	I	M	D	Q	I	I	L	Q	M	G	Q	K	M	G	V	K	I	S	D	E	Q	L	D	Q	A	I	A	N	I	A
Query Conservation
Alig confidence																													.
Template Conservation																													.
Template Sequence		L	N	R	V	I	A	T	V	G	T	V	S	I	S	E	L	D	L	D	D	A	T	E	K	Y	N	R	.	L	Q	K	H	L	K	H	E	D	Y	R	K	S	F	R	T	R	I	I	D	F	L	I	D	R	A	I	V	D	V	V	A	E	E	E	S	I	Q	V	N	E	Q	R	V	D	S	E	I	E	K	R	M
Template Known Secondary structure										T	T																		.		T	T	T						T	T	S																							T	T
Template Predicted Secondary structure																													.
Template SS confidence
		50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.		.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.
		105	.	.	.			.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.
Predicted Secondary structure						.	.
Query SS confidence						.	.
Query Sequence		K	Q	N	N	.	.	M	T	L	D	Q	M	R	S	R	L	A	Y	D	G	L	N	Y	N	T	Y	R	N	Q	I	R	K	E	M	I	I	S	E	V	R	N	N	E	V	R	R	R	I	T	I	L	P	Q	E	V	E	S	L	A	Q	Q	V	G	N	Q	N	D	A	S	T	E	L	N	L	S	H	I	L	I	P
Query Conservation						.	.
Alig confidence						.	.																																									.
Template Conservation																																																.
Template Sequence		E	V	M	G	I	T	N	R	K	Q	F	E	K	T	M	E	T	S	S	G	M	P	F	E	L	W	V	T	E	L	P	Y	Q	I	K	K	G	Q	L	L	Q	L	K	I	A	V	.	P	P	P	N	E	Q	E	I	R	S	W	Y	N	Q	N	K	D	K	V	G	F	E	I	R	Y	R	I	I	S	I	A	P	E
Template Known Secondary structure																						S						G	G	G														T				.																																	S
Template Predicted Secondary structure																																																.
Template SS confidence
		129	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.		.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.
		183	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	P	E	N	P	T	S	D	Q	V	N	E	A	E	S	Q	A	R	A	I	V	D	Q	A	R	N	G	A	D	F	G	K	L	A	I	A	H	S	A	D	Q	Q	A	L	N	G	G	Q	M	G	W	G	R	I	Q	E	L	P	G	I	F	A	Q	A	L	S	T	A	K	K	G	D	I	V	G	P	I	R	S	G
Query Conservation
Template Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		263	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	G	F	H	I	L	K	V	N	D	L	R	G	E	S	K	N	I	S	V	T	E	V	H	A	R	H	I	L	L	K	P	S	P	I	M	T	D	E	Q	A	R	V	K	L	E	Q	I	A	A	D	I	K	S	G	K	T	T	F	A	A	A	A	K	E	F	S	Q	D	P	G	S	A	N	Q	G	G	D	L	G
Query Conservation
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	N	D	S	I	Q	E	E	N	R	L	Y	K	E	V	S	E	I	R	K	S	I	L	A	D	P	S	S	F	A	L	I	A	G	S	P	R	N	D	P	A	L	R	A	R	R	G	M	V	E
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S	S																							T	T								S	T	T	S							T	T	T
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
																																	208	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.
		343	.	.	.				.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.
Predicted Secondary structure						.	.	.
Query SS confidence						.	.	.
Query Sequence		W	A	T	P	.	.	.	D	I	F	D	P	A	F	R	D	A	L	T	R	L	N	K	G	Q	M	S	A	P	V	H	S	S	F	G	W	H	L	I	E	L	L	D	T	R	N	V	D	K	T	D	A	A	Q	K	D	R	A	Y	R	M	L	M	N	R	K	F	S	E	E	A	A	S	W	M	Q	E	Q	R	A
Query Conservation						.	.	.
Alig confidence						.	.	.																																									.
Template Conservation																																																	.
Template Sequence		W	I	S	S	F	D	L	Y	K	Y	S	K	I	T	A	T	I	A	A	P	L	P	N	G	G	V	S	E	V	F	R	D	E	R	K	R	Y	C	I	L	K	I	E	G	K	R	P	.	T	P	M	E	N	L	R	G	G	I	Q	N	I	L	Y	R	D	K	E	E	D	T	F	H	R	W	L	K	E	S	R	A
Template Known Secondary structure																				T	T			T	T		B							T	T	S													.
Template Predicted Secondary structure																																																	.
Template SS confidence
		257	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.		.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.
		420	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	A	Y	V	K	I	L	S	N
Query Conservation
Alig confidence
Template Conservation
Template Sequence		E	I	P	I	Q	I	F	D	E
Template Known Secondary structure			S
Template Predicted Secondary structure
Template SS confidence
		336	.	.	.	340	.	.	.	.

---

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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