Job Description P75684 Confidence 98.62% Date Thu Jan 5 12:13:05 GMT 2012 Rank 30 Aligned Residues 124 % Identity 15% Template c2f78A_ PDB info PDB header:gene regulation Chain: A: PDB Molecule:hth-type transcriptional regulator benm; PDBTitle: benm effector binding domain with its effector benzoate Resolution 2.05 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		9	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	A	A	G	R	G	E	C	F	L	A	S	G	G	N	T	H	K	C	I	G	W	R	Q	S	P	E	V	A	P	Y	R	W	P	F	E	E	N	G	R	T	F	D	L	A	I	E	P	Q	I	T	T	N	D	L	R	L	M	L	R	L	A	L	A	G	G	G	I	T	I	A	T	Q	E	T	F	R	P	Y	I
Query Conservation
Alig confidence																								.
Template Conservation																								.
Template Sequence		L	N	Q	M	K	D	K	G	V	H	L	N	D	L	I	D	E	K	I	L	L	Y	.	P	S	S	P	K	P	N	F	S	T	H	V	M	N	I	F	S	D	H	G	L	E	P	T	K	I	N	E	V	R	E	V	Q	L	A	L	G	L	V	A	A	G	E	G	I	S	L	V	P	A	S	T	Q	S	I	Q	L
Template Known Secondary structure		G	G	G	G	T	T	T		B		G	G	G	S	T	T	S						.			S	S	S	S	S											T	T	T				S	S					S	S											T	S		B					G	G	G	G	G
Template Predicted Secondary structure																								.
Template SS confidence
		174	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.		.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.
		89	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	S	G	K	L	V	S	L	L	D	D	F	L	P	Q	F	P	G	F	Y	L	Y	F	P	Q	R	R	N	I	A	P	K	L	R	A	L	I	D	Y	V	K	E	W	R	Q	Q	L	A
Query Conservation
Alig confidence														.	.															.
Template Conservation														.	.															.
Template Sequence		F	N	L	S	Y	V	P	L	L	D	P	D	.	.	A	I	T	P	I	Y	I	A	V	R	N	M	E	E	.	S	T	Y	I	Y	S	L	Y	E	T	I	R	Q	I	Y	A	Y	E	G
Template Known Secondary structure		T	T						B			T	T	.	.											S	S			.																		T	T
Template Predicted Secondary structure														.	.															.
Template SS confidence
		253	.	.	.	.	.	.	260	.	.	.	.			.	.	.	.	.	270	.	.	.	.	.	.	.	.		.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions